Hnig014355.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720162.1:2737474-2744061[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 4.3e-05 0.0043 18.6 2.1 1 23 135 157 135 157 0.99
2 18 4.2e-06 0.00042 21.7 2.7 1 23 163 185 163 185 0.98
3 18 0.00057 0.057 15.0 3.4 1 23 191 213 191 213 0.99
4 18 0.00024 0.024 16.2 0.3 1 23 219 241 219 241 0.99
5 18 5.2e-05 0.0051 18.3 0.8 1 23 247 269 247 269 0.99
6 18 0.025 2.5 9.9 0.3 1 23 275 297 275 297 0.98
7 18 0.00037 0.037 15.6 2.5 1 23 323 345 323 345 0.98
8 18 0.0025 0.25 13.0 2.0 1 23 351 373 351 373 0.96
9 18 0.017 1.7 10.4 3.2 1 23 534 556 534 556 0.98
10 18 0.00075 0.075 14.6 1.8 1 23 562 584 562 584 0.98
11 18 7.1e-05 0.007 17.9 0.3 3 23 592 612 590 612 0.97
12 18 8.5e-05 0.0085 17.6 1.8 1 23 618 640 618 640 0.99
13 18 0.013 1.3 10.8 6.9 1 23 646 668 646 668 0.98
14 18 5.8e-05 0.0058 18.1 1.6 1 23 674 696 674 696 0.98
15 18 0.0037 0.37 12.5 3.6 1 23 702 724 702 724 0.98
16 18 0.074 7.4 8.4 1.1 1 23 730 752 730 752 0.98
17 18 0.18 18 7.2 7.0 1 23 758 780 758 780 0.97
18 18 0.065 6.5 8.5 8.6 3 23 788 808 786 809 0.94

Sequence Information

Coding Sequence
atggaaaatatagaaaaagagTCAAACATTATCAAAACTGAACCCATTGAGTTATATTCGGATGAACCAGATGACTTTTCAGAAGTTTCCGATGTAAAAATAGAACCAATTGAAAttaaagTGCATCATGAACGTGGTGGGTATACAGTATCAGCCCCACTACCTTCTCCAGGGGTCAAGATTGAACATATCAGCATAAAAATGGAGCCGCCTGAAAGTATCGGAACCGAAGATGTTACTTCGATACAAAGCGAGGAAGACATTACAAATCCTTTGGACGAGAGTAATTTAGATCCTGAAACATCAGAAGAAAAACGTTTTCATTGTCCCGAATGTAGTTTCCAAACAAATCATAAATCAAGTATTCGTTGTCATAGGATTCGACACAaaggggaaaagccttttaaatgtagtGTCTGCGGATATGCAACTGTCTTTAAAAACCATCTCAATCAAcacatgaaaatacattttaGTGAAAAACCGTTTCATTGTCCTGAATGTGAATATACAAGTGCGGATAAATCAAATTTAAGAAAACACATGAAAAAACACGGTGGGAAAGAACCTTTTAAATGCACGGTTTGCACTTATGCCACAGCTAATAGTACACATTTTCAAGCCCATAAGAGGACGCATAATGGGGAAAAACCTTATGAATGTTTGGAATGTGATTTTCGAACCGCCCATAAAGGAGCGTTAGTTATCCACATCCGCACgcacactggagaaaagccttacAAGTGTGACGAATGTGATTATGCGGCAGCACGAAAAGAACATCTTTTAAGACATGTAAAATCCCACAGtgaagaaaaacaatttaaatgcGATTTGTGTGATTTCCAAGCAGATGGAAAGAAAGTCTTACAAAGTCATATGAGGGTACACGCCTTTGAATGCCaggaatgtaaatttaaatgcgAGAACAAGGTACATTCAAGAACGCATAACGGAGGAAAATCTTACTCATGTCACTTGTGTAATTTTAAAACCTCGCGGAAACCGTCTTTAAATATTCACATAAAAGTACACAGTGGGGAAAAACCGTACGCTTGCAACTTATGTAATTATGCTACGGCACGAAAACAACATCTTTCAAGACATAAAACAATTCACGCCGTAGAAAAATCTAATCGTACTGGGGAAAAGCCAATTAAAGGAGAAAATCAATGTCACACTGGTGAGAAGCCGACCAAAATTGAATTCTTTCAAAAAGAAAATGCATTTTACAatgaaaattcaattaaatctgAAATATGTGATGAGACAGATTCCGATGAACCAAGTGGAAATGAAGGTAACAGCATAAAAAATGAATCCTTCGAAGACGACCCGGAGCTTACCCCTCACTTTCATAAAGTCCCCGATATTAAACTTAAACCTGAagtaaaGCAAGAAGTTAATCCGGAACCTCAACTTTCAAACGTGAAATTTGAATGTGTCACCGTTAAATCCGAACCAATTCTCGAGTTTGAAACCCAAGAAGAAATAATATCCACTCCAGATTTCCATCAACGTTTTGATGACTGTAACAACGAAACTCCAACTGTATTAAATTTggtaaaagaaactttaaaagtGGCAAAAGAAAAACGTTATCAGTGTCCGGAATGTGATTTTAAAACCCACAGCAAATCGAGTATTCGTTCGCATAAAATTCGTCACAAAGGTGacaagccttttaaatgtaatttatgtGGATACGCAGCAATGTTTAAAGATTACCTTCAGCGCCATATGCATATTCACAGTAGCGTGAAACCGTTGGCTTGTCCCGACTGTGCCTATACGACGGCAGATAAATCTAGtttaagaaaacatttaaagaaaCACGGAGGGGCTGAACCATTTAAATGCATGGTTTGTCCGTATGCAACGATTAATAGCACACATTTTCAAGTGCACATGAGAACACACAATGGGGAAAAGCCTCACAAGTGTTCGCATTGTAATTTTAGGACCGCGCATAAAACAgctttaactttacatttaagaATACACACTGGAGAGAAACCGTTTACATGTGATTTATGTGAGTATGCAGCGTCGAGAAGACAACATTTAATAAGGCATATGAGAAGTCACACGGACGATAAACCGCATCAATGTGAAAAGTGCCAATATCGGACTCGAGAAAGAGATGTCTTACAATCCCATATGAAGACGCATACAGATGTGAAGCCGTATGAATGTGAACAATGCATTTATAGAACGGTGGATAAAAAAAGGCTCGGTAAACACATGAAAACGCATTTAAAGGAAACTCCGTTTCATTGCACCGAATGTTCTTATAAAACAGGGCACAGTCATTTATTAAAAAGACATATTGGGAAACATATTGAAGAAAAACCCATTCATTGCTTAAAATGTACTTTTAAAACCACCACAAGATCTCATTTAACTTTACATATTAGACGACATCATTAG
Protein Sequence
MENIEKESNIIKTEPIELYSDEPDDFSEVSDVKIEPIEIKVHHERGGYTVSAPLPSPGVKIEHISIKMEPPESIGTEDVTSIQSEEDITNPLDESNLDPETSEEKRFHCPECSFQTNHKSSIRCHRIRHKGEKPFKCSVCGYATVFKNHLNQHMKIHFSEKPFHCPECEYTSADKSNLRKHMKKHGGKEPFKCTVCTYATANSTHFQAHKRTHNGEKPYECLECDFRTAHKGALVIHIRTHTGEKPYKCDECDYAAARKEHLLRHVKSHSEEKQFKCDLCDFQADGKKVLQSHMRVHAFECQECKFKCENKVHSRTHNGGKSYSCHLCNFKTSRKPSLNIHIKVHSGEKPYACNLCNYATARKQHLSRHKTIHAVEKSNRTGEKPIKGENQCHTGEKPTKIEFFQKENAFYNENSIKSEICDETDSDEPSGNEGNSIKNESFEDDPELTPHFHKVPDIKLKPEVKQEVNPEPQLSNVKFECVTVKSEPILEFETQEEIISTPDFHQRFDDCNNETPTVLNLVKETLKVAKEKRYQCPECDFKTHSKSSIRSHKIRHKGDKPFKCNLCGYAAMFKDYLQRHMHIHSSVKPLACPDCAYTTADKSSLRKHLKKHGGAEPFKCMVCPYATINSTHFQVHMRTHNGEKPHKCSHCNFRTAHKTALTLHLRIHTGEKPFTCDLCEYAASRRQHLIRHMRSHTDDKPHQCEKCQYRTRERDVLQSHMKTHTDVKPYECEQCIYRTVDKKRLGKHMKTHLKETPFHCTECSYKTGHSHLLKRHIGKHIEEKPIHCLKCTFKTTTRSHLTLHIRRHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-