Hnig028816.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- lola
- Assembly
- GCA_963082805.1
- Location
- OY720165.1:31499923-31514240[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.082 8.2 8.2 1.4 1 21 11 31 11 32 0.93 2 19 0.00012 0.012 17.2 2.5 1 23 40 63 40 63 0.96 3 19 0.002 0.2 13.3 2.4 1 21 80 100 80 100 0.95 4 19 0.00086 0.086 14.5 0.4 3 21 127 145 125 146 0.94 5 19 0.053 5.3 8.8 1.6 1 15 154 168 154 171 0.87 6 19 6.1e-05 0.0061 18.1 0.8 1 21 179 199 179 200 0.96 7 19 0.027 2.6 9.8 1.9 1 16 208 223 208 225 0.91 8 19 0.012 1.2 10.8 1.2 1 21 279 299 279 300 0.92 9 19 0.00053 0.053 15.1 0.3 2 21 326 345 326 346 0.93 10 19 0.0015 0.15 13.7 0.2 3 21 369 387 367 388 0.96 11 19 0.0017 0.17 13.6 2.6 1 23 396 419 396 419 0.96 12 19 0.001 0.1 14.2 6.6 1 21 453 473 453 474 0.96 13 19 2.4e-05 0.0024 19.3 3.7 1 20 482 501 482 503 0.95 14 19 0.00039 0.039 15.5 0.4 1 21 514 534 514 535 0.94 15 19 3.8 3.8e+02 3.0 0.3 1 9 543 551 543 555 0.85 16 19 0.0019 0.19 13.4 1.2 3 21 557 575 556 576 0.95 17 19 1.6 1.6e+02 4.2 1.2 1 14 584 597 584 598 0.88 18 19 0.049 4.9 8.9 0.9 1 21 613 633 613 634 0.94 19 19 0.00038 0.038 15.6 0.3 1 23 642 667 642 667 0.96
Sequence Information
- Coding Sequence
- atgaaaaatatatattacGAACGACAACCACACAAATGCGAAGTTTGCAATCGAACATATAAATGGAGACGTGGATTAATCCAGCACAAAAGATACGAATGCGGAAAGGATCCTCAATTTAGTTGTTCCCTGTGCGATTACAAATCGAAAACTAAAGGAAATTTGAAACAACACATGGATAAAAAACATAACTGTTTTATACCTATATATCCATACCAAATTGATGGAAATGgaagatttatttgcttcaaATGTGGAAATTCGTATAAACATAAAAGTACTTTAACTTTACATCTTAAATGCGAATGTGGAGTTGAACCACAGTTCAAATatCGCCAACGATATGAATACGTCGTAAATTCAGATGGACGTTATGGATGTCTTAGATGTGGCTTATCATACAAACAAAAGGGCCATCTTAACGCTCACATAAAATATGAATGTGGTGTTGATCCAAAATTTACTTGTCACCTTTGTAATCGTAAATTTAAACatccGCTACAATTTGAATACGTCGTAAATTCAAACGGACGTTATGAATGCCTAAGATGTGGCTTATCATACAAACAAAAGGGCCATCTTAAAGCTCACATTAAATATGAATGTGGTGTTGATCCAAAATTTACTTGTCACCTTTGCAAACGTAAATTTAAACGTAAAAaATTTTTGGTTTTGGATTCGATTGTACCGCCTGAAGAGAACAAGGTATTGGTTTCTCTGTTACAAAAGGCACCCTCTTCAAATATTAAGACACGCAGTGGAGGAAAATCATTGcgtaaatttaaaagtttaagtcAACAGGTGACCCGTCCAGGATACAGCAGCGATTCTCAATTTGCTTGTCGCCATTGCGGAAAACGTTATCGTTGGAAATCCACGATGCGTAGACACGAACAAGTTGAATGTGGTGGAAAAGAACCAAAATTTGATATATCTTCCTTTTTTTTAGATACAGAACCTGATCACAGTCGGAACAGTTGCACAAGATGTGGAAAAACTTATAATCAAAATTATGAACTTGAAGAGCATGTTAAGTTTGAATGCGGAAATGAATCACAGTTTCAATGTGTTCACTattcaAGTAAAGAAATCGGCTGTTTTGGATGTCCAACTTGTGGAAAATCTTATAAATGGAAAGCTTCGTTAAGAAATCACCTTAGAAATGAATGCGGAAAAGAACCCCAATATAAATGCCAATTTTGTTCTTATCGAACCAGACAAAAGGGAAACTTTTTAAGACATTTAGCTTCCATGcataaactaaatttaaaatcccaAAAACAACAAGACATGCCTGATTttGCTTCTTCCGATGTATGGTATGGAGAAGTCCAATTAACTCAAGAAGAAACAAGATATTATTGCAACAATTGCCATAGAAACTTTAAATATCGAAAACATCTTAAAAGTCACATAAAGTACGAATGTGGCAAAGAACCTCAATTTGAATGCGAAATATGCCAGAAAAGATTCAAAAGAAAAGAACATTTAAAAAGTCATCGCTTACatcCTTGGAGAAAGTCCTCgcaaaaaaatcgttttatatGTTTTAAATGTGGAGCTAGCTACAAGCAGAAGGGTAACGTCAAAAGACATCTTCAATTAGAATGCGGGGTTGATCCACAATTTAAATGTTctgtatGTGGTACAAAGTCAATGACAAATTTTTGTCCGTACTGTGGGAAAAATTACAAGCACTCGTTTATCCTTACAAGACATTTACGTTATGAATGTGGAAAGGAGCCCATGTTTTTATGTCCATATTGTCCACATAAAACCAaaagaaaaagttcCGAAACAGACTTTAATTATGTCCCGTATGAACGAAGAGGAACGTACAGGTGCGATGTTTGTTCCCGATCGTATACGTGGCAACGTGGTTTAAGACAACATAAGAAATACGAATGCGGAATAGAACCGCAGTTCGTTTGTCCTAAACCAGGATGTGGACATAAATCTAAAATGAAAGGAAACCTTAAAAGGCACATCATTGTAATTCATGGCGATTTAGAATTAGCGGAAGCTGttatgaaaaacaataattaa
- Protein Sequence
- MKNIYYERQPHKCEVCNRTYKWRRGLIQHKRYECGKDPQFSCSLCDYKSKTKGNLKQHMDKKHNCFIPIYPYQIDGNGRFICFKCGNSYKHKSTLTLHLKCECGVEPQFKYRQRYEYVVNSDGRYGCLRCGLSYKQKGHLNAHIKYECGVDPKFTCHLCNRKFKHPLQFEYVVNSNGRYECLRCGLSYKQKGHLKAHIKYECGVDPKFTCHLCKRKFKRKKFLVLDSIVPPEENKVLVSLLQKAPSSNIKTRSGGKSLRKFKSLSQQVTRPGYSSDSQFACRHCGKRYRWKSTMRRHEQVECGGKEPKFDISSFFLDTEPDHSRNSCTRCGKTYNQNYELEEHVKFECGNESQFQCVHYSSKEIGCFGCPTCGKSYKWKASLRNHLRNECGKEPQYKCQFCSYRTRQKGNFLRHLASMHKLNLKSQKQQDMPDFASSDVWYGEVQLTQEETRYYCNNCHRNFKYRKHLKSHIKYECGKEPQFECEICQKRFKRKEHLKSHRLHPWRKSSQKNRFICFKCGASYKQKGNVKRHLQLECGVDPQFKCSVCGTKSMTNFCPYCGKNYKHSFILTRHLRYECGKEPMFLCPYCPHKTKRKSSETDFNYVPYERRGTYRCDVCSRSYTWQRGLRQHKKYECGIEPQFVCPKPGCGHKSKMKGNLKRHIIVIHGDLELAEAVMKNNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -