Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720163.1:5385563-5389627[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9.3 9.3e+02 1.8 0.5 5 23 185 204 182 204 0.88

2 13 0.037 3.7 9.3 4.1 2 21 234 253 233 255 0.94

3 13 0.00012 0.012 17.2 5.6 1 23 261 283 261 283 0.99

4 13 0.0012 0.12 14.0 6.9 1 23 289 311 289 311 0.99

5 13 0.052 5.2 8.9 2.9 3 20 320 337 318 339 0.92

6 13 3.3e-07 3.3e-05 25.2 0.7 3 23 418 438 417 438 0.99

7 13 5.6e-05 0.0056 18.2 1.0 1 23 444 466 444 466 0.99

8 13 7.5e-07 7.5e-05 24.1 1.7 1 23 472 494 472 494 0.97

9 13 1.8e-06 0.00018 22.9 2.0 2 23 500 521 500 521 0.97

10 13 3.4e-05 0.0034 18.9 1.2 1 23 527 549 527 549 0.95

11 13 2.4e-08 2.4e-06 28.8 1.5 1 23 555 577 555 577 0.99

12 13 6.3e-05 0.0063 18.0 4.3 1 23 583 605 583 605 0.98

13 13 0.0002 0.02 16.5 1.4 1 23 616 639 616 639 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9.3	9.3e+02	1.8	0.5	5	23	185	204	182	204	0.88
2	13	0.037	3.7	9.3	4.1	2	21	234	253	233	255	0.94
3	13	0.00012	0.012	17.2	5.6	1	23	261	283	261	283	0.99
4	13	0.0012	0.12	14.0	6.9	1	23	289	311	289	311	0.99
5	13	0.052	5.2	8.9	2.9	3	20	320	337	318	339	0.92
6	13	3.3e-07	3.3e-05	25.2	0.7	3	23	418	438	417	438	0.99
7	13	5.6e-05	0.0056	18.2	1.0	1	23	444	466	444	466	0.99
8	13	7.5e-07	7.5e-05	24.1	1.7	1	23	472	494	472	494	0.97
9	13	1.8e-06	0.00018	22.9	2.0	2	23	500	521	500	521	0.97
10	13	3.4e-05	0.0034	18.9	1.2	1	23	527	549	527	549	0.95
11	13	2.4e-08	2.4e-06	28.8	1.5	1	23	555	577	555	577	0.99
12	13	6.3e-05	0.0063	18.0	4.3	1	23	583	605	583	605	0.98
13	13	0.0002	0.02	16.5	1.4	1	23	616	639	616	639	0.93

Sequence Information

Coding Sequence: atggaCAGTACAgaatatttagttttaaacttcaataaaatttgtaggGCATGTTTGTGTGAGAATAcaaacatgaaaaatatgtttaGTAATGAACCAACTGGAACAAGTATCATAGAAATGTTTGTTGCAATCGCTAGTGTTGAGGTGATACAGTCCAACACAATATCCTCTCAGCTATGCAAGCAATGTGaggaaaaattaaacatatCTTACAGTTTTCGACAGCAGTGTCGAAAATccaatgaaataattataaattacattaaCTCCAATAGAGATTCTGAAaaagtaTTGCCTGAAATTAAAACTGATGAATTGAAAACAGAGTTGCTTGTTGATTTATTTAAGGAAGAAGATTTATCTGATTATAATTATGGAAAAAGCTCAGATGATTCTGATTATGAACCTAATTGTCCTAAAAAATCAcaagttaaaaagaaaagtaaagAAGTTAAACAAACCATGCGGTTAACTCAATTTTCATATGATGAAGTGACACAAGCAATAGAAGAGTCTCgaagaaaattttttgaaaatactgaATGTATAAGATGTGGATTTGTTGGTAATAATACTAGAGCCTTATCAGTTCATATGTCACATTTACATAAAGATTTAAAAGAAAGGTGGTGTGCTCAGTGCAATGGggagtttgaaaatttaaccGACCATCTTAAGATTCatgaaaatgatttaaaatgtcagttttgtgaaaaagttttccaagCAAAAGGTCATTTAACAGAACATTTACGTTGTCATTCTGGTGTTCGACCTTATAAATGTGATTCCTGTGAGAAGTGCTTTATATCTCAAAGACATTTGAATGTACACTTTAGAATCCATTCCAATGAGCGACCTTATAAGTGTAGATTATGTACAAGAGCATTTATTCAACATACTTCATTAAAACATCACCTTAAAAGGCATGAAAAGGGTAGGAATAACCAACACTGTACAGTATGcaagaagaattttaaaaatgaggtGTTATACGAAAAACACGCTTGTTCTCCTAATAATAGTAATATACCAGAAAGTATAGAAGAAAATAATCAAGAGTCGGTAGTTACTGAAAATGATAGTCCACATTATAGTCCACACTGTGTgtaTTTAAGGACGCCTCAGAATTATTGTGTAGAGTGTAATAAAAAAGTGAGAAGCTTGTTAGTACATAACAGACAAGTTCATTCTGAGAATTCAAAAGTATTTAACGAATATGGTGATAATGTCTTAGATAACAAGTTATGTACTGTTTGTGGAAAGCAATTTAAgaCAGCCTCTAAATTAAGAGTTCATATGAGAGTTCACACCGGTGAAGCACCTTACAAGTGTTCCTTTTGTGATAAAAGAGTTACCACAAGGAATCAATTGGTTGTGCATGAACGAATACATACTGGCGAACGACCTCATGTTTGTCATATTTGTGGGAAGGGATTTGCCCAGTCTAGTGTCTTAAACACTCACATGAGATTACATACTGGTCGTCCAGAAGTTTGTAAAATCTGTGACCAGAGATTTTGTAGACCAGCTGAATTACGTTTACATATGAGAAAGCATACAGgtgaaaaaccatttttaTGCACGGAATGTGGTCAGGCTTTTATTCAACGCAGTCATTTAGTTGAACATAATAAAACACACAGCGATTTAAGGCCCTATCAATGCACATATTGTGATAAGGCGTTTAAGCAAAATTCTTCATTAAAGTCCCATATTCAAATCCATCTTGgaTGCAAACCATTTAAATGTAGTCAGTGCCCATACGCATGTCGACAGAGTTATAGTCTTACCCAGCATATGAAACAACACTCCAATGATGCACCAAGATCAGATCGACCTCATATGtgtttaatttgtaataaaagttttaccaCACTTGCTATGCTTACTTCCCATGCTAGTTCATTtcataatcataatttaaaaaaagatttgtaTGATTAA
Protein Sequence: MDSTEYLVLNFNKICRACLCENTNMKNMFSNEPTGTSIIEMFVAIASVEVIQSNTISSQLCKQCEEKLNISYSFRQQCRKSNEIIINYINSNRDSEKVLPEIKTDELKTELLVDLFKEEDLSDYNYGKSSDDSDYEPNCPKKSQVKKKSKEVKQTMRLTQFSYDEVTQAIEESRRKFFENTECIRCGFVGNNTRALSVHMSHLHKDLKERWCAQCNGEFENLTDHLKIHENDLKCQFCEKVFQAKGHLTEHLRCHSGVRPYKCDSCEKCFISQRHLNVHFRIHSNERPYKCRLCTRAFIQHTSLKHHLKRHEKGRNNQHCTVCKKNFKNEVLYEKHACSPNNSNIPESIEENNQESVVTENDSPHYSPHCVYLRTPQNYCVECNKKVRSLLVHNRQVHSENSKVFNEYGDNVLDNKLCTVCGKQFKTASKLRVHMRVHTGEAPYKCSFCDKRVTTRNQLVVHERIHTGERPHVCHICGKGFAQSSVLNTHMRLHTGRPEVCKICDQRFCRPAELRLHMRKHTGEKPFLCTECGQAFIQRSHLVEHNKTHSDLRPYQCTYCDKAFKQNSSLKSHIQIHLGCKPFKCSQCPYACRQSYSLTQHMKQHSNDAPRSDRPHMCLICNKSFTTLAMLTSHASSFHNHNLKKDLYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -