Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720163.1:2842828-2852313[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.27 27 6.6 0.1 1 20 288 307 288 309 0.95

2 20 3e-06 0.0003 22.2 1.5 1 23 341 363 341 363 0.98

3 20 0.034 3.4 9.4 2.2 1 23 369 391 369 391 0.99

4 20 8.9e-05 0.0089 17.6 2.3 1 23 397 419 397 419 0.99

5 20 0.02 2 10.2 0.2 1 23 425 447 425 447 0.98

6 20 0.003 0.3 12.7 2.9 1 23 453 475 453 475 0.98

7 20 7e-05 0.007 17.9 3.8 1 23 481 503 481 503 0.98

8 20 0.0029 0.29 12.8 2.5 1 23 510 532 510 532 0.98

9 20 0.0053 0.53 12.0 6.5 1 23 538 561 538 561 0.98

10 20 0.00045 0.045 15.3 3.8 1 23 567 589 567 589 0.98

11 20 0.015 1.5 10.6 4.0 1 23 595 617 595 617 0.99

12 20 0.0015 0.14 13.7 5.9 1 23 623 645 623 645 0.98

13 20 0.00032 0.032 15.8 1.1 2 23 652 673 651 673 0.97

14 20 0.00081 0.081 14.5 0.5 1 23 763 785 763 785 0.98

15 20 0.0085 0.85 11.3 2.0 1 23 791 813 791 813 0.99

16 20 0.0013 0.13 13.9 7.8 1 23 819 841 819 841 0.99

17 20 0.005 0.5 12.1 3.0 2 23 848 869 847 869 0.97

18 20 0.00012 0.012 17.2 2.2 1 23 875 897 875 897 0.98

19 20 0.017 1.7 10.3 4.4 1 23 903 926 903 926 0.98

20 20 0.00043 0.043 15.4 5.7 1 23 932 954 932 954 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.27	27	6.6	0.1	1	20	288	307	288	309	0.95
2	20	3e-06	0.0003	22.2	1.5	1	23	341	363	341	363	0.98
3	20	0.034	3.4	9.4	2.2	1	23	369	391	369	391	0.99
4	20	8.9e-05	0.0089	17.6	2.3	1	23	397	419	397	419	0.99
5	20	0.02	2	10.2	0.2	1	23	425	447	425	447	0.98
6	20	0.003	0.3	12.7	2.9	1	23	453	475	453	475	0.98
7	20	7e-05	0.007	17.9	3.8	1	23	481	503	481	503	0.98
8	20	0.0029	0.29	12.8	2.5	1	23	510	532	510	532	0.98
9	20	0.0053	0.53	12.0	6.5	1	23	538	561	538	561	0.98
10	20	0.00045	0.045	15.3	3.8	1	23	567	589	567	589	0.98
11	20	0.015	1.5	10.6	4.0	1	23	595	617	595	617	0.99
12	20	0.0015	0.14	13.7	5.9	1	23	623	645	623	645	0.98
13	20	0.00032	0.032	15.8	1.1	2	23	652	673	651	673	0.97
14	20	0.00081	0.081	14.5	0.5	1	23	763	785	763	785	0.98
15	20	0.0085	0.85	11.3	2.0	1	23	791	813	791	813	0.99
16	20	0.0013	0.13	13.9	7.8	1	23	819	841	819	841	0.99
17	20	0.005	0.5	12.1	3.0	2	23	848	869	847	869	0.97
18	20	0.00012	0.012	17.2	2.2	1	23	875	897	875	897	0.98
19	20	0.017	1.7	10.3	4.4	1	23	903	926	903	926	0.98
20	20	0.00043	0.043	15.4	5.7	1	23	932	954	932	954	0.99

Sequence Information

Coding Sequence: atggagGAACAAAACTCTATAGATTCATTACACCATGAAGTCGATGACATTTTCGAAGGTTTCGATCTGAATAAAGTGAAGCTCGAAGAATCACTTCATGGACCGATTTCACCGAACGGGTTTATAGAAAGTATTATTGtgAAGCGAGAACAAACTGAAAAGTCAAATAACCATCCACAAACAAAATCTAAACAGAATTCGCATTACAATTTATTGGGACAACCTGTTGCTAAGAAGAGGAGGTGTGTCAAAACAACAAGGAAGCAATACATGCTGTACTTGGAAGAACTGGAAAAGAATGAATGCTTTAGATTCAATAAAAGTTATCCAGAAAATCCAAACATTTTAGAACTGACCTGGAGAAAATTAACAAATCGTTTGAATAGTGTTGGAGGTCCTCAAAAAAATACAACAGGTTGGAAAAGGgttttcaCCGACTGGAAATCTTCCGTTAGGAAACGGGCcagaattttaaaactttccgCAAGTTTAACAGGAGAACCCCCTGAAAAACCATTATCCGACatcgaagaaaaattaatacgCCTTATAGGAACCGTAACTATTGATGGATTAAAAGATGTTGACGAAATAAGTTTTCTCCCTAGCAATAATGaacaAGAAAAATCTACAAATCAATTCCTAGGACCTGGTACATCGCAAATTTTAAACGATTCTGCAATGATACTTGAACGTGTTCAATTTTTGGACCGTCTACaaataattcctgaaaatcCTGATATTACCTTTGGAATCAATGCTGATAATGGTGACATCTACGTTAAGCGCGAGCCTTTGAAGACTGAAGAATTAGATATAGAAAATGAAACTGAGGAGATTCAAACAAACAATGTAGAGAAATTTGTTTGTGCTTTATGTAGTGCTGTATTCGGGAAGAGAATTTACTTGAGACAACATCTGCATGCAGAACCCTTACGATGCAAGAAATGCTCTTATGAATGTTTACGAAGATGTGTTCTAAAGCAACATGTTCTTAAAAAACATATCAAAAACCGCCCTCATAAATGTAACGAGTGTGTTCGTAGCTTCGTAAGTAACGCCCTGTTAGAGCGACATTTGAGAACacatactggggaaaagccgTTTAAGTGTAGCGTATGTTATTTTGAATCTTCACACGAGGGTTCTATAACAAAGCATATGAAAATCCATACAGAAGAAAATTCTTACAAATGCAAAGAATGCGATTTTGCAACTAGACGCATGAGTTTCTTAAAGCAACACATGAAAATACATACAGGGGATAAACGATTTATATGCAATGTCTGCGATTTTAGAACTAATGCAAGGGTTAAATTAGAAGATCATCTCAGAATCCATACGGGAGAAAAACTATATAGTTGCCATTTATGCGATTTTCGATGTGCGACGAAATCTTCCATAAATGCACATTTACTCGTACATAAAGGAAAAAAATCACATCAATGTACTGTGTGTGATTATAGATTTTTAACAAAGGTACAACTAAAACGACATATGAATACGCATGGTGCACgagaaaaagaatttaaatgcAGTGTATGTGACTATAAATGTTTACAAAAGGGTAACGTAGAGCGACATATGAAGATCCAcactggggaaaaacctttcaaaTGTAGTATGTGTGACCATAGATGTCGGCGTAAGGCACACTTAGACCTGCATATTATGAAAGTTCATACaggggaaaagcctttcaaatGTGGTAAATGCGATTTTAGTAGTCGAGATCGCGGTCACTTAAACCGACATGAAAAGCGCCATACAGGCGACACCTCTTTTAAATGTAACGTCTGTAGTCATATATGTGCGGTAAAGAGTGAGTTTGATAGACATTTGCAAACCCATACAGGAGAAAAATCGTATCATTGCCATATATGTAACGCTAGTTATGGGCACAAATCTAATTTAGTGTATCATCTAAAATCCCATACAGATGAAAAGCCTCTGAAATGCAGTAAATGCGATTATAGCACTATACGACCTACCAGTTTTAAAGAACATATGATAAAGCATTCTGtgATACTCGAAAAAGTTCGATGGTTAGACAAACTACAAATAGTATCCGAAATTCCCGATACTGATATTGGAATCACTGATACAGACACCAATCCTGAGCCCACTGTGAGTGTAGAACtggataaaaataagaaaacaaacGAAACTCCAGTAGATCGAAATTTTTATTGTGCTTTATGTAACGGAAAATTTACAACGAAGAAAAGAACCATCACAAAGGCCCGGTTAAAAAGACATACGATGACCCATACAAAAGAAAACCCATTTAAATGTACTATATGCGATTATGGTACTATAACGAAATCCCGGATAAGAGCACATATGCTGAGCCATACAGGAGAAAGGCCATTTAAATGCAGTGTATGCGATTCTGGATTCAGATGCAAATCTACTTTAATCGGCCATATGAAAATCCATGCCGTAGAAAAATCGTTTAAATGCCATTTATGCGATCATAAAACCAAATACAAAACTCTCCTAAAACGCCATATACAGACCCATACAGGAGAAAAGTCAGTTAAATGTAGtaaatgtgattatagatgcATCTCTAAAGGTCGGTTAAACGAACATATGTTCACCCATACAGGGGAAAGGCCATTTACATGTAGCATATGCAATTATAGATTCAAGTGGAAGCAGAACTTAAAAAATCATATGATCAGCCATACGAAGGAAAAGCCGTTTAAATGTTATTTATGCGAGTATAAATGCAAAAGGAAGGAGCCTCTAAAAGAACATATTATGAAGAAGCATACAAAAGATACGCCATTCAAATGTAGTAAATGCGATTATAGATGCCGTAAGAAGGTTGTCTTAACTCGACATATGAACACCCATAAACAATAA
Protein Sequence: MEEQNSIDSLHHEVDDIFEGFDLNKVKLEESLHGPISPNGFIESIIVKREQTEKSNNHPQTKSKQNSHYNLLGQPVAKKRRCVKTTRKQYMLYLEELEKNECFRFNKSYPENPNILELTWRKLTNRLNSVGGPQKNTTGWKRVFTDWKSSVRKRARILKLSASLTGEPPEKPLSDIEEKLIRLIGTVTIDGLKDVDEISFLPSNNEQEKSTNQFLGPGTSQILNDSAMILERVQFLDRLQIIPENPDITFGINADNGDIYVKREPLKTEELDIENETEEIQTNNVEKFVCALCSAVFGKRIYLRQHLHAEPLRCKKCSYECLRRCVLKQHVLKKHIKNRPHKCNECVRSFVSNALLERHLRTHTGEKPFKCSVCYFESSHEGSITKHMKIHTEENSYKCKECDFATRRMSFLKQHMKIHTGDKRFICNVCDFRTNARVKLEDHLRIHTGEKLYSCHLCDFRCATKSSINAHLLVHKGKKSHQCTVCDYRFLTKVQLKRHMNTHGAREKEFKCSVCDYKCLQKGNVERHMKIHTGEKPFKCSMCDHRCRRKAHLDLHIMKVHTGEKPFKCGKCDFSSRDRGHLNRHEKRHTGDTSFKCNVCSHICAVKSEFDRHLQTHTGEKSYHCHICNASYGHKSNLVYHLKSHTDEKPLKCSKCDYSTIRPTSFKEHMIKHSVILEKVRWLDKLQIVSEIPDTDIGITDTDTNPEPTVSVELDKNKKTNETPVDRNFYCALCNGKFTTKKRTITKARLKRHTMTHTKENPFKCTICDYGTITKSRIRAHMLSHTGERPFKCSVCDSGFRCKSTLIGHMKIHAVEKSFKCHLCDHKTKYKTLLKRHIQTHTGEKSVKCSKCDYRCISKGRLNEHMFTHTGERPFTCSICNYRFKWKQNLKNHMISHTKEKPFKCYLCEYKCKRKEPLKEHIMKKHTKDTPFKCSKCDYRCRKKVVLTRHMNTHKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -