Hnig028823.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
lola
Assembly
GCA_963082805.1
Location
OY720165.1:31568100-31593148[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.7e-05 0.0087 17.6 0.8 1 21 15 35 15 36 0.96
2 16 0.00025 0.025 16.1 9.7 1 23 44 66 44 66 0.99
3 16 0.0001 0.01 17.3 0.2 2 21 127 146 126 147 0.95
4 16 0.022 2.2 10.0 3.5 1 23 155 178 155 178 0.96
5 16 0.0017 0.17 13.5 3.0 1 21 199 219 199 220 0.93
6 16 0.00012 0.012 17.2 2.0 1 21 238 258 238 259 0.95
7 16 0.00024 0.024 16.2 6.8 1 23 267 289 267 289 0.98
8 16 0.00014 0.014 16.9 0.2 1 21 311 331 311 332 0.95
9 16 0.55 55 5.6 0.5 3 23 342 363 340 363 0.91
10 16 1.8e-05 0.0018 19.8 0.4 1 21 412 432 412 433 0.95
11 16 0.0034 0.34 12.6 1.9 1 23 441 464 441 464 0.96
12 16 0.017 1.7 10.4 0.2 1 21 708 730 708 731 0.96
13 16 0.0045 0.45 12.2 6.3 1 21 749 769 749 770 0.95
14 16 0.00027 0.027 16.0 0.2 1 21 778 798 778 799 0.96
15 16 0.00031 0.031 15.8 1.6 3 20 838 855 837 857 0.95
16 16 0.00075 0.075 14.6 2.5 2 23 866 888 865 888 0.96

Sequence Information

Coding Sequence
ATGTTATACTACTTGACCGTTCCTTCAacccaagaaaaattattcgaATGTGTCCTCTGCAACAGAAGATACAATCGAAGGGATAATTTATCCAGACATATACGATTCGAATGCGGCCAAGAACCTAGATTTCAATGCCAGCATTGTTTGTTCAAATTCAAAAGGAAGGAACATTTGAAAAGGCATCTTAGGAAGCATGTGGTTGATGGAAATGTCATAGAAACTTGCCGATATGTTTTGAAATGTGAAGATGATAGTCGCAGTAACTGGCCTGCCCATTTAGCCTTACCGGTGATGCTTATTCAAGAAAATCCTAAAAATTCTTGCGTTGAAATTACCCCTAATCAATCACCAAAATATGTTGATGGTACTGGAGTTGAATGCCCCGATTGTGGCCGCAATTACAAGTTACGGAGCTCTTTACGTAATCATCAGAAATGGGAATGTGGGAAAGAAGCAAAATTTAAATGTCCTTTTTGTTCTTATAAGtctaaacaaaaaatacatatgACTAGGCATGTCGATAGAATACATATTGCTGCTTATAACAGGGAAAAATTAAATGAGCAGAGGGCTCGAAGAAGATCAGGGACTCACGTTTGTTTTAAATGCAATAAAGTTTATACACATCGGGCATCTCTTTGGAAACATAAAAACTACGAATGTGGAAAACTTCCATCGTTTATATGCCTTGAAGAAGGTCTCCTGCGATACTTTTGCATGAAATGTGGTAGAACATATAAAAGAAAAGATAGTCTTCAAAGCCATCTGAAATTTGAATGTGGTAAAGTGCCACAATTTTCTTGTGATTTATGTGGTAGAAGATTTCATCATAAATCTACCCTTACTAGACATTTTAAAGTGCATCAAAAATTAATGGAGTTAACAAAAGAGATTATTTTCTTACAAGGTGTAACCAAAAAGAAGAAGTATCAGTGCCCTGTTTGTTCAAAAGAATATTCTGTAAAATCTACGTTAGCACGCCATGCTAAATACGAATGTAGAAAGGAACCCATGTTTGGCTGTCCCAAGTGTTCTTACAGGGGCTATCAAAAAGCTCATGTTATTAAACATTTGTATGGAATACATGGATTTATTTGGGACTCGCAAAACTCAAATCATCAACCAGGATCAAAATGGACAAAAATGAGCTTCGAAGCTTTACCCACCCTCTTAGACTTTACCATCTCAGAATCTCTTCAGCATTCAAAACCTGTCCTAGACGGACCTTCATATGATTGCCCTGATTGCGGAAGAACTTACAAACTGAAGAGTTCTTTAAGAAACCATCGTAAATGGGAATGTGGCAAGGAACCACAATTTAAATGTCCTTATTGCGTTtataaagcaaaacaaaaaatgcaTTTGGTTCGACATTTAGATCGTGTCCATAAGGAAATTGATTATGGAGTCCTTAGTGAAATGGATCTAAGATTGGAAGTCAATGAGGATAAGTGTTTGGCTGAAAAAAGAGCACAACAAGCAAGTTTTGCCTGCTGTAAAAaaCGAAGAGGAAGTAATTCGTACGACTCTGTAGCTTCGCCTGGTTCAAGTGGAGGGCATCAGCATTACAAGACAAAAAGGATGAGGACTTCTTTCACACCGGGTCAATTAAAAACTCTTCACATTTCTTTTGGTAGCAACCAAAACCCTGATgctattgattttgaaaaactcgAAGAAACAACAGGACTTTCCAAGAGAGTATTACAAGTTTGGTTTCAAAACGCCCGAGCAAAATGGAGAAAGAAAGTTGGCAAAAGATCTGCAACTGCTCGTGAGCATGCAATTCAAAGCCAAAGCGAATCTATTCCTGCTTCAATTCCTGCCAATTCAGGGGATTCCCGTACATTATCATCTCAACCAAATGCTGCTCCACCCCCACCACTACCAGCAGCGTATCCGTTTCCACGTCATCCGGATATCCCCCCTCCCCCAGCTCTGCCTACCCACCCAGGCTTTAAATATTGGCGatcAATGTTACTACGACCAATTCCAAGACAAGTTTattCTTCAGTAAAAGTAGAACCAAATGAAGAAGatgaattttccatttgcaACCTTACTGATAAAGACCTTCCGGATATTTCAACAATGTCTTTATTTGGTACTACAGAAAGATTTGTCTGTCCTAGTTGTGGACCTGCAAAGACTTACAAATTTAAAGGAAGCTTATCAAGGCATTTGAAATATGAATGCGAAGTTATACCAAAATTTCAATGTGAAGCGTGTTCAAACAAACGATTCAGATGTTCGCGATGTCATAAAgcttacaagtataaatcaaccCTTCATCGACATACAAAATATGAATGCGATGGAGTTGCACGTTTTAGCTGCCCTGTGTGTAAAAAGGCTTACACGCAAAGCAACACAGTTCGTCAACACATTCGTGCAAatgaaGCTGAAACCACCCCaactaaaagttttaataagaaATGGGAGATCCATACTGAAGTGTCTTCTAAGTTTGAAGTTCAAAACGTTAAAGGAAGGGCAAGCGGAATTTTATGCACCAAATGTGGAAAGATGTATTGTACCAAAGGAAGTCTTATGAGACATCTTACGTACGAATGTGGAAAAGCACCGTCTTTGAAATGTCCCCTATGTGAGGTCTCCACGAAGCACAAATCAAGCATGCGACGACACATGGCTAAATTTCATCCTGAATATGATTGcagctttattaaataa
Protein Sequence
MLYYLTVPSTQEKLFECVLCNRRYNRRDNLSRHIRFECGQEPRFQCQHCLFKFKRKEHLKRHLRKHVVDGNVIETCRYVLKCEDDSRSNWPAHLALPVMLIQENPKNSCVEITPNQSPKYVDGTGVECPDCGRNYKLRSSLRNHQKWECGKEAKFKCPFCSYKSKQKIHMTRHVDRIHIAAYNREKLNEQRARRRSGTHVCFKCNKVYTHRASLWKHKNYECGKLPSFICLEEGLLRYFCMKCGRTYKRKDSLQSHLKFECGKVPQFSCDLCGRRFHHKSTLTRHFKVHQKLMELTKEIIFLQGVTKKKKYQCPVCSKEYSVKSTLARHAKYECRKEPMFGCPKCSYRGYQKAHVIKHLYGIHGFIWDSQNSNHQPGSKWTKMSFEALPTLLDFTISESLQHSKPVLDGPSYDCPDCGRTYKLKSSLRNHRKWECGKEPQFKCPYCVYKAKQKMHLVRHLDRVHKEIDYGVLSEMDLRLEVNEDKCLAEKRAQQASFACCKKRRGSNSYDSVASPGSSGGHQHYKTKRMRTSFTPGQLKTLHISFGSNQNPDAIDFEKLEETTGLSKRVLQVWFQNARAKWRKKVGKRSATAREHAIQSQSESIPASIPANSGDSRTLSSQPNAAPPPPLPAAYPFPRHPDIPPPPALPTHPGFKYWRSMLLRPIPRQVYSSVKVEPNEEDEFSICNLTDKDLPDISTMSLFGTTERFVCPSCGPAKTYKFKGSLSRHLKYECEVIPKFQCEACSNKRFRCSRCHKAYKYKSTLHRHTKYECDGVARFSCPVCKKAYTQSNTVRQHIRANEAETTPTKSFNKKWEIHTEVSSKFEVQNVKGRASGILCTKCGKMYCTKGSLMRHLTYECGKAPSLKCPLCEVSTKHKSSMRRHMAKFHPEYDCSFIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00788413;
90% Identity
iTF_00788413;
80% Identity
iTF_00788413;