Hnig030195.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- -
- Assembly
- GCA_963082805.1
- Location
- OY720166.1:29157138-29164891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0021 0.21 13.2 2.4 3 23 212 233 210 233 0.93 2 21 0.98 98 4.8 4.3 1 21 359 379 359 380 0.94 3 21 2.5 2.5e+02 3.6 0.4 6 21 446 461 444 462 0.91 4 21 1.3 1.3e+02 4.5 0.6 1 19 468 486 468 491 0.94 5 21 0.018 1.8 10.3 0.9 2 23 576 600 575 600 0.94 6 21 0.022 2.2 10.0 0.1 2 23 608 630 607 630 0.88 7 21 0.011 1.1 11.0 0.1 1 23 652 674 652 674 0.96 8 21 0.0055 0.55 11.9 0.1 3 23 679 699 678 699 0.95 9 21 2.2e-06 0.00022 22.6 0.9 2 23 723 744 722 744 0.94 10 21 0.1 10 7.9 1.6 1 23 767 790 767 790 0.93 11 21 0.013 1.3 10.7 0.4 2 23 801 822 801 822 0.98 12 21 8.9e-05 0.0089 17.6 6.9 1 21 856 876 856 878 0.96 13 21 0.63 63 5.4 0.6 3 23 901 921 899 921 0.96 14 21 4.7e-05 0.0047 18.4 1.0 1 23 943 965 943 965 0.97 15 21 0.00052 0.052 15.1 0.1 2 23 979 1001 978 1001 0.94 16 21 0.00037 0.037 15.6 0.1 1 23 1023 1045 1023 1045 0.95 17 21 0.013 1.3 10.8 0.3 1 23 1076 1099 1076 1099 0.95 18 21 0.0083 0.83 11.4 1.4 2 23 1108 1129 1107 1129 0.95 19 21 0.00054 0.054 15.1 2.9 1 23 1141 1163 1141 1164 0.95 20 21 1.4e-05 0.0014 20.1 0.6 1 23 1172 1194 1172 1194 0.98 21 21 0.0036 0.36 12.5 0.0 1 23 1214 1237 1214 1237 0.95
Sequence Information
- Coding Sequence
- ATGGGTGAACGCAGGTGGGGCAATTTTAGCTCCTGTTGTCGACTCTGCTTGTCTGAAAAACTGGGCACGTTGAAGTCCATTTTCGAAGATGCGTCTCGTAGCCGTGAAATTGTGAAGAACATACACAACTTCCTCGGAGTAGAAATTGAAGCAAATGATAAGCTATCAACCATGATCTGTGAGCAATGTTTGGGTAAAGTAAATAGTTGGAATGATTATAGGAAATTTTGTAGTGaaaatcaatcaaaattatTGGGATGGATGAATACATGGACGTCTACTAATATTGCAGACATAAGTATCCAAATAAAAGATGAAATTGTTGAAGACGGTGAAGAACAACCACCTCAAATAATAGTGGATGATGATTCCGACGATgtcATTCAAGTAAAAGCTGAAGCAATTGAAAATTCATTTGAACCTGATTCTATGGAGGAAGACATATACGATATGCCACCACCATTAACACCTCATCCACCCGATGAACACGTTCATTCCTTCATGAACGCAAGTGATGAAGATGAAGATAATGAACAGGAAAGAACAAATGAACCAACTCCATTAGAAGTTTCAGAAGTTAACGGAATGGttaacGGAGATGAATTGTTGGATACACCTGTTGATGCAAGATGTTGTCGTATGTGCGATAAAGTATTCAGTAGTGCTGGAAATCGGAGAAAACATGAAAATATGATCCATAGgcgcaaagaaaaaaatttaaaccctaAGAGTAATGAGAGTTTACGATCTAAAGataaTCCTGATGGAGAACAAGGGGCGACTTCTATTGAAACTCCTACGAGATCAAGAACGATGTCATCTGGGAACGAAACGGAAATGCAAAAAATTCAATTTGCAGCTGGGTTGCAGTTACAACAAAGGTCAGCAAACTCTAGTAATCAGGTACCGATAGAAAACATGCCTCTCACCAAGGTAGAAATAAGTTATTTAGAAAAGTGTAAGATAATTGTAAGAATGACTGATACGTTAACATGCGCATGTCACGACGAACGGTTTGTAGATCTTAAAGATCTCtttgcacatttaaaaaaacaacgcACTTGGTTTGCAATGTTTACTTGTTATAATTGTTTGATAACTTTTGGTGATAGATCTTCTTACATGAAACATTATTGTCATTGTCCGAGAGAtctgttacaaaatttaaaacgccTTTCCGAATCTCCTGTAAATCCCGAAATTAAAATCCGATTGTATCAAAGTTATAAATGTATCCGATGCAATTGTATTTTTAGTTTCCATGAAGATTTTTGTAGCCACTTTGATGTGGAACACATGGAAATGTTACAGAATAAGGCTCCTTATATTTGTTTGTGTTTGAAATCTTTTAGTCAAGTAGAGGAGTATAAGCAACATTTACATATTTCTTGTTTTTTGAGATATTTTTGTGATATATGTTTTGGAGTCTTTGCGACTATGGATGCGTTTAAAGCACATTGCGAAGGGGAACATGATTTAGCTGAAGGGAGTACCGTAGATTCTTACGATACCTTCCATAAATGTAGACTTGCAAATTCAGAAATAGATCCTCCACCACCGATTATAAGTAAAAGATCTCTTGATCAAATTAAAGAAAGTGGAGAAGAGGTTAATATTAAAAGACGTCGaactattaatttaccggttaATTCTGAACTGGAAGAAGGGGAATCCCTTAAAGTAATTAATCCTCATGCGCTACGGAATCAAAAATCAAAACCAACTTCCTGTCCTGCTATAGGttgtacaaaaatttattcttcATATCATAATATGTTACGACATTATAAATTATCGCACGATCAATCTGGTAAACTTTTGGTGTGTATGTATTGTCCGCAAAGGTTCCGACTTCTTAGCGAATTAAAAGAGCATGAAGGGATTGTACACGGAGAGGAAACCGAAGGAGATGGGGTTGTAAAAACACCACCCATACAATCGGaacaattcaaattttcttgtCCTGAATGTGGGGATTTATTTAAAAGCCTTGAAGAGTGGAAAACTCATATGGCTGCGCATCCGAAGAAAATTTGTACTGAATGCGGTAAACAATTTGCGTTACAAGCCGAGCTTGATCAACACCGAAGTGCCCATTTAAACATTAAGGTGTATAGAGATGCGAAAACTCAGGGTTATAAAAGTACGATGGTTAGTCCGATATTAATTTGTGAAATTTGCGATAAAACGTTCAAGACGAAAAGTGAACTACGTCAACATAAATTACTTCACGAAAAAATGCCGGTACTTAGTGCCCATGATAGTgttgtagaagaaaaaaaagaccTTAGCAAAAAATATAGTTGCACCATCTGTAACAAACATTATGTAAGTTACGGAGGAATTTGGGatcataataaaaaataccaTTCCGGACAACAAATTACAAGTTATCCACGCCGATGTAACCGTTGTGCGAAAGTTTTAACTTCAAAAGGTGCTTGGGTAAATCATCAAAGGATGCACGGGCGATTACAGACGACCCCGAAAGAAATACAAGAAGATGTTACGGTAAATCGGACGCCTAAACCAAGGGTGATTAAAAATAGTGACGAAGAATCGTACTACAcctgtaaaaaatgttttaaagtcTTTTCAAGTAAATATAGTCTAAGGAATCATATGAGATGTCATGGAATTGTTTTAAATCCGAGTAGTAGATCGAGTTCGAAAaccggtaaaataataaaaacgtattGGTGCGACGTTTGCCATCAAGCATGTCCAGGTTACGCAGAACTTCAAGAACATAAACAAGAACATCGAAATGAAAAGGTTCCTCAAACTAATTCAACGGATACGACGGAACAAAAGAAACCGTTAACATTTGCTTGTGATATTTGTACGCTTAGTTTTTCCACGAATTTTGCTCTTAAACGGCATAGGGAAAAGCATGAAGAAGCGGATACTAAACCAAAACATCTTGTATCCGTGTActgtaaatattgtaaaatcCCGTTTGTAAATTTGGACGAGTTGAATGATCACATGGCTAACGAACACGATCAACCAATTCCGAAACTGAAACCACAGCAACCGGTAATACAAAAAAAGACCGGAAGGAAATTTCCTTGTAAATTATGTAAGAAAGTTTTTGATAATGCAGGCGCATTATCTTCCCATCAAGGTTGGCATAAAAGAGGTacgtttggaaaaaaaattcttagatcACAAGAAAAAGTTGTAAGAACAATGTTGAAACAATCGGCCACCGAAACAAACCTTTATCAATGTTACACGTGTTCGCAACAATTTGTCAACGACACCGCCTTACAAATACACATCCTTGAATCACATAGAAATGTTAACGCAACGGTCTTGAACTGTAACAGTTGTAAATTAAGTTTTGAATCAAAATCAACGTACGATACACATATGCAGTTGCATAAAGTTGTTGAGAATCAAAAGACGCCAAAAGCGCATCCTTGTAAATTTTGTTCTGCTGGGTTTAGTCGAAGTGATACTTTAAACACGCATGTTAGGATTCATCATAAAGAACATTATAGTGATACCTTTAAATGTAGTCAATGTGATCGTGTGTTTGATAAACAAAATGCTCTTACGATTCATTTGAAGGTACACGATCGGCAACGCGGTTCAGGAGAAAGTACACCCAAACctattcataataaaaatatttatttttgttcgaTTTGTGATGTAGGTTTTGCTGTTGCCAAAGATCTACGTGCACATGTTGTTACTGCTCACCCATTTTGA
- Protein Sequence
- MGERRWGNFSSCCRLCLSEKLGTLKSIFEDASRSREIVKNIHNFLGVEIEANDKLSTMICEQCLGKVNSWNDYRKFCSENQSKLLGWMNTWTSTNIADISIQIKDEIVEDGEEQPPQIIVDDDSDDVIQVKAEAIENSFEPDSMEEDIYDMPPPLTPHPPDEHVHSFMNASDEDEDNEQERTNEPTPLEVSEVNGMVNGDELLDTPVDARCCRMCDKVFSSAGNRRKHENMIHRRKEKNLNPKSNESLRSKDNPDGEQGATSIETPTRSRTMSSGNETEMQKIQFAAGLQLQQRSANSSNQVPIENMPLTKVEISYLEKCKIIVRMTDTLTCACHDERFVDLKDLFAHLKKQRTWFAMFTCYNCLITFGDRSSYMKHYCHCPRDLLQNLKRLSESPVNPEIKIRLYQSYKCIRCNCIFSFHEDFCSHFDVEHMEMLQNKAPYICLCLKSFSQVEEYKQHLHISCFLRYFCDICFGVFATMDAFKAHCEGEHDLAEGSTVDSYDTFHKCRLANSEIDPPPPIISKRSLDQIKESGEEVNIKRRRTINLPVNSELEEGESLKVINPHALRNQKSKPTSCPAIGCTKIYSSYHNMLRHYKLSHDQSGKLLVCMYCPQRFRLLSELKEHEGIVHGEETEGDGVVKTPPIQSEQFKFSCPECGDLFKSLEEWKTHMAAHPKKICTECGKQFALQAELDQHRSAHLNIKVYRDAKTQGYKSTMVSPILICEICDKTFKTKSELRQHKLLHEKMPVLSAHDSVVEEKKDLSKKYSCTICNKHYVSYGGIWDHNKKYHSGQQITSYPRRCNRCAKVLTSKGAWVNHQRMHGRLQTTPKEIQEDVTVNRTPKPRVIKNSDEESYYTCKKCFKVFSSKYSLRNHMRCHGIVLNPSSRSSSKTGKIIKTYWCDVCHQACPGYAELQEHKQEHRNEKVPQTNSTDTTEQKKPLTFACDICTLSFSTNFALKRHREKHEEADTKPKHLVSVYCKYCKIPFVNLDELNDHMANEHDQPIPKLKPQQPVIQKKTGRKFPCKLCKKVFDNAGALSSHQGWHKRGTFGKKILRSQEKVVRTMLKQSATETNLYQCYTCSQQFVNDTALQIHILESHRNVNATVLNCNSCKLSFESKSTYDTHMQLHKVVENQKTPKAHPCKFCSAGFSRSDTLNTHVRIHHKEHYSDTFKCSQCDRVFDKQNALTIHLKVHDRQRGSGESTPKPIHNKNIYFCSICDVGFAVAKDLRAHVVTAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -