Hnig020423.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720163.1:2853220-2857774[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.014 1.4 10.6 1.5 1 23 109 131 109 131 0.94
2 18 0.029 2.9 9.7 1.4 1 23 137 159 137 159 0.96
3 18 0.069 6.9 8.5 0.0 1 21 231 251 231 252 0.95
4 18 1.9e-06 0.00019 22.8 1.3 1 23 284 306 284 306 0.98
5 18 0.13 13 7.6 1.4 1 23 312 334 312 334 0.98
6 18 0.0012 0.12 13.9 3.1 1 23 340 362 340 362 0.99
7 18 0.016 1.6 10.5 0.2 1 23 368 390 368 390 0.97
8 18 8.3e-05 0.0083 17.7 0.1 1 23 396 418 396 418 0.98
9 18 2.2e-07 2.2e-05 25.8 2.2 1 23 424 446 424 446 0.99
10 18 0.015 1.5 10.6 0.5 1 23 452 474 452 474 0.96
11 18 0.0032 0.32 12.6 6.3 1 23 480 503 480 503 0.98
12 18 0.003 0.3 12.7 3.5 1 23 509 531 509 531 0.95
13 18 0.00023 0.023 16.2 4.5 1 23 537 559 537 559 0.99
14 18 0.00022 0.022 16.3 6.8 1 23 565 587 565 587 0.98
15 18 0.00033 0.033 15.7 2.4 2 23 594 615 593 615 0.97
16 18 6.2e-06 0.00062 21.2 4.2 1 23 621 643 621 643 0.99
17 18 0.0021 0.21 13.3 3.2 1 23 649 671 649 671 0.98
18 18 0.00042 0.042 15.4 5.6 1 23 677 700 677 700 0.96

Sequence Information

Coding Sequence
ATGGATCTACCTGTTATAAATTCCGTTTACATAAAAACTGAAATCGAAGATGAAAGAGAATACGCCAATGAAGAAAATTCAAGTAATCAGTTTCCTGATGAACTTGAAGACACAATTCATAGTAAAGGTGGATATGGCAGCGATGATTGGAATGAAAACACAATCAAAACCGAATTCATCGACATGGAAATACAAccagaattaataaaaatagaagaaatcAACATAGAGCCTGATATTACCCAAAACACAGAACACGATCCTGTTAACTGTAAACAAACTCTGAATCTCATCCCCTGCGAAAATGAATTCGAAAATAAACGTTTTTCCTGTATCGTATGCGAATATAAATCTTCACAAAAAAGCAAAGTAAAACGGCACATGAAAATTCACACTGGAATCAAACCTTTTGCATGTGAAACATGCGAATATAAATGTTTGGAAGCGAATGAGTTACGTAGACACATTAGAacacacactggggaaaagccataTCAATGTAAAATGTTGATACTTGAACGTGTTCAATTTTTGGACCGTCTACAAATAATTCCTGAAGACCCTGATCTAACCTTTGGAATCAATGCGGATAATGGTGACATCTACATTAAGCGCGAGCCTTTGAAGACTGAAGAATTAGATATAGACAATGAAACTGATGAGACTCAAACAGATCACAATGAAGAGAAATTTGTTTGTGCTTTATGTAATGCTGTATTCGGGAAGAGAATGGGCTTAAGACAACATCTGCAAGCAGAACCCTTACGATGCAAGCAATGCTCTTATAAATGTTTACGAAAATGTGTTCTAAAGCAACATGTTCTTAAAAATCACATCAAAAACCGCCCTCATAAATGTAATGAGTGTGTTCGTAGCTTCGCAAGTAACGCCCTGTTAGAGCGACATTTGAGAACacatactggggaaaagccgTTTAAATGTAGTGTATGTTATTTTGAATCTTCACACGAGGGTTCTATAACAAAACATTTGTTAATCCATTCTGAAGAAAAATCTTACAAATGCCAAAAATGCGATTATAAAACTAGTAGTATGGTTTACTTAAAGCAACACAGGAAAATTCATATAGGGGTTAAACGATTTATATGCAATATCTGCGATTATAAAACTGATGTCAGAGTTAAATTAGAAGGACATCTTAAATCCCATAcaagagaaaaattatttaaatgcgaTATGTGTGATGCTCGATTCGCGGAGGAATGGAACTTAAAACGACATGTGCTAATCCACACAGGAGAGAAACCGTTTAAATGCACGGTCTGTGGTTATAAATTCTCAGAAAAGGCATACCTAAAACGACATATGAATACGCATGAACgagaaaaagaatttaaatgcAGTTTATGTGACTATAAATCTTTACAAAAGGGTAACGTAGAGCGACATATGGATATCCACACAggggaaaaacctttcaaaTGCAGTATGTGTGACCATAGATGTCGGCGCAAGGCACACTTAGACCTGCATATTATGAAAGCTCATAcaggggaaaagccttttaaatgtggTAAATGCGATTTTAGAAGTCGAGATCGCGGTCACTTAAAACGACATGAAACGCTCCATACAGGCGACACCCCTTTTAAATGTAACGTCTGCAATTGTATATGTGCGGTAAAGAGTCAGTTAGAaagacatttgaaaacccatacagcaGAAAAATCGTATCATTGCCATATATGTAATGCTAGTTATGTACAAAAATCTACTTTAACGCATCATCTAAAATCCCACGCAGATGAAAAGCCTCTGAAATGCAGTAAATGCGATTATAGCTGTATACGAACTGCCAGTTTAAAAGAACATATGATAAAGCATTCCGGTATAATGCCTTATAAATGCAATGTATGTGACTATGCATGCATACAGAAGAGTAATTTCACTCAGCACATGAAAAGACACATgggggaaaaaccttttaagtGTTCTATATGTGATTATGCATGTTTAGTAAAAACAAACTTGAAACGGCATTTAAAAAGTCATACAGAAAATAAACCGTTCAAATGCAATGAATGCGATCATACTTGCAGGGAGAAGAGCAACATGAAAAAGCATATCATGGCTAAGcataagaataaaaagacttcAAGTTAA
Protein Sequence
MDLPVINSVYIKTEIEDEREYANEENSSNQFPDELEDTIHSKGGYGSDDWNENTIKTEFIDMEIQPELIKIEEINIEPDITQNTEHDPVNCKQTLNLIPCENEFENKRFSCIVCEYKSSQKSKVKRHMKIHTGIKPFACETCEYKCLEANELRRHIRTHTGEKPYQCKMLILERVQFLDRLQIIPEDPDLTFGINADNGDIYIKREPLKTEELDIDNETDETQTDHNEEKFVCALCNAVFGKRMGLRQHLQAEPLRCKQCSYKCLRKCVLKQHVLKNHIKNRPHKCNECVRSFASNALLERHLRTHTGEKPFKCSVCYFESSHEGSITKHLLIHSEEKSYKCQKCDYKTSSMVYLKQHRKIHIGVKRFICNICDYKTDVRVKLEGHLKSHTREKLFKCDMCDARFAEEWNLKRHVLIHTGEKPFKCTVCGYKFSEKAYLKRHMNTHEREKEFKCSLCDYKSLQKGNVERHMDIHTGEKPFKCSMCDHRCRRKAHLDLHIMKAHTGEKPFKCGKCDFRSRDRGHLKRHETLHTGDTPFKCNVCNCICAVKSQLERHLKTHTAEKSYHCHICNASYVQKSTLTHHLKSHADEKPLKCSKCDYSCIRTASLKEHMIKHSGIMPYKCNVCDYACIQKSNFTQHMKRHMGEKPFKCSICDYACLVKTNLKRHLKSHTENKPFKCNECDHTCREKSNMKKHIMAKHKNKKTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-