Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720162.1:2701765-2703263[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0054 0.54 11.9 3.9 1 23 79 101 79 101 0.98

2 14 3e-05 0.003 19.0 0.5 1 23 106 128 106 128 0.95

3 14 5.1e-05 0.0051 18.3 1.1 1 23 133 155 133 155 0.98

4 14 0.059 5.9 8.7 2.0 1 23 161 183 161 183 0.95

5 14 2.3e-05 0.0023 19.4 7.1 1 23 189 211 189 211 0.99

6 14 2.7e-05 0.0027 19.2 2.2 3 23 223 243 221 243 0.97

7 14 6.9e-06 0.00069 21.0 1.4 3 23 251 271 249 271 0.97

8 14 3.4e-05 0.0034 18.8 0.9 1 23 277 299 277 299 0.94

9 14 0.00048 0.048 15.2 0.8 1 23 305 327 305 327 0.99

10 14 0.00059 0.059 15.0 3.7 1 23 333 355 333 355 0.98

11 14 1.9e-05 0.0019 19.6 1.7 3 23 363 383 361 383 0.97

12 14 3.3e-05 0.0033 18.9 1.0 2 23 390 411 389 411 0.97

13 14 0.00014 0.014 17.0 1.2 1 23 417 439 417 439 0.95

14 14 0.00029 0.029 15.9 0.5 1 21 445 465 445 466 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0054	0.54	11.9	3.9	1	23	79	101	79	101	0.98
2	14	3e-05	0.003	19.0	0.5	1	23	106	128	106	128	0.95
3	14	5.1e-05	0.0051	18.3	1.1	1	23	133	155	133	155	0.98
4	14	0.059	5.9	8.7	2.0	1	23	161	183	161	183	0.95
5	14	2.3e-05	0.0023	19.4	7.1	1	23	189	211	189	211	0.99
6	14	2.7e-05	0.0027	19.2	2.2	3	23	223	243	221	243	0.97
7	14	6.9e-06	0.00069	21.0	1.4	3	23	251	271	249	271	0.97
8	14	3.4e-05	0.0034	18.8	0.9	1	23	277	299	277	299	0.94
9	14	0.00048	0.048	15.2	0.8	1	23	305	327	305	327	0.99
10	14	0.00059	0.059	15.0	3.7	1	23	333	355	333	355	0.98
11	14	1.9e-05	0.0019	19.6	1.7	3	23	363	383	361	383	0.97
12	14	3.3e-05	0.0033	18.9	1.0	2	23	390	411	389	411	0.97
13	14	0.00014	0.014	17.0	1.2	1	23	417	439	417	439	0.95
14	14	0.00029	0.029	15.9	0.5	1	21	445	465	445	466	0.95

Sequence Information

Coding Sequence: atGGATTTATTACCAAACGAAGAAGTTTTTATAAAGGACGAACCAAATAATTTAATGGATGAGGAAATTATTTCGACTCCAGTTTTCGGtttgtccaaaatcaaacaCGAGTTAGAATCACCCGATGAAGCTCCTTTACCAAGTGttcaaataaacttaaaaatcgAGAAGccagaaatagaagaaattttaattaaagacgaAAGTGAACCCGAAAATCCAATCCCAAAACCTTTTGAATGCacaatatgtaaaaaaaaattactgcgTAAAAGTTACTTACACGAACATATGAAACTCCATATAGGAAAAAAATTCGAATGCATAACGTGTAACAGAAAATTCGTCCAAGCTTACGATTTACGTATCCACATGCGAATACATTCAGGTAAACCTTTTATTTGTAAACTCTGCAACAACAGTTATATTACGGAAAAAACCTTAAGAAATCACATGCGGATTCACGTAGgaaaaaaatcgtttaaatGCGAAATTTGCGAATACAAATGTTTACGTAAAGGGGATCTTGTAAAACATTCTACAATCCACACGGGAGAAAAACCATTCGAATGTGAAATATGCAAGAATAGGTTTTCCCATAGCAGTCATTTATATCGGCACCGAAGAacacacactggggaaaagcctcgTGAAAAAAGTCTCGCTTGCGAAATCTGCGATAAACATTTCTCGGAACAAGGTTGTTTACAAGGACATATGAAAACACACACCGCAGAAAAATTATTAGCCTGTGAAATATGTAACAAAAAGTTTtcgattaaaaaatatcttttacgGCACATGAAGCGGCACAATATAAAAAAACCGTACGAATGTGAtatttgtaaaaagaaatacaCGACGAAAGGTACTTTAAAGATCCATTTCGGAGTCCATAGTGGAATAAAACCGTACCAATGTTCTACGTGTAAGCAAGGATTTTTACGCCCCTACGATTTAAAACTTCACGTTATGACCCAtactggagaaaaaccttttgaaTGTACAATTTGCGATAAAAAATTCTCCTGCAAAAGCCGTTTATATCAACACATCCAAGTTCACATTAAAGAAGAACCGTTAGATTGTAAATTATGTAACCGaaccttttctttattttacgaactgcaacaacatatgaaaacgcACAACGAAGAAAAACAACTCGAGTGTGTTATATGTAATAAGAAATTCCTacgtaattttaatttgcaaagGCATTTAAGGatacacactggggaaaagccttttgaaTGTATCGTATGTCAAAGGAAATTTACCCTTAAAGATAATTTGCAGCAGCATTTACAAACGCATCTGGAGCATAAACCGTTTCAATGCGGGACTTGTAAAATGGGATTTGCTTACAAAAATAGTTTGAAAAGgcatattttaaaaagatgtcGTAAAGTAGTTGATGGTTTGGATATATCTTGCAGCTGA
Protein Sequence: MDLLPNEEVFIKDEPNNLMDEEIISTPVFGLSKIKHELESPDEAPLPSVQINLKIEKPEIEEILIKDESEPENPIPKPFECTICKKKLLRKSYLHEHMKLHIGKKFECITCNRKFVQAYDLRIHMRIHSGKPFICKLCNNSYITEKTLRNHMRIHVGKKSFKCEICEYKCLRKGDLVKHSTIHTGEKPFECEICKNRFSHSSHLYRHRRTHTGEKPREKSLACEICDKHFSEQGCLQGHMKTHTAEKLLACEICNKKFSIKKYLLRHMKRHNIKKPYECDICKKKYTTKGTLKIHFGVHSGIKPYQCSTCKQGFLRPYDLKLHVMTHTGEKPFECTICDKKFSCKSRLYQHIQVHIKEEPLDCKLCNRTFSLFYELQQHMKTHNEEKQLECVICNKKFLRNFNLQRHLRIHTGEKPFECIVCQRKFTLKDNLQQHLQTHLEHKPFQCGTCKMGFAYKNSLKRHILKRCRKVVDGLDISCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -