Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720159.1:12171346-12175865[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.1 14.2 0.1 2 23 187 208 186 208 0.97

2 12 1.4e-05 0.0014 20.1 0.2 1 23 214 236 214 236 0.98

3 12 0.00063 0.063 14.9 0.8 2 23 255 277 254 277 0.94

4 12 8.7e-06 0.00086 20.7 1.5 1 23 287 309 287 309 0.98

5 12 2.7e-05 0.0027 19.2 1.4 2 23 316 337 315 337 0.96

6 12 1.8e-07 1.8e-05 26.1 0.6 1 23 343 365 343 365 0.98

7 12 1.1e-05 0.0011 20.4 0.4 1 23 371 393 371 393 0.97

8 12 0.0012 0.12 14.0 5.9 1 23 399 421 399 421 0.98

9 12 5.9e-05 0.0059 18.1 2.3 1 23 427 449 427 449 0.98

10 12 5.3e-05 0.0053 18.2 0.5 1 23 455 477 455 477 0.97

11 12 4.1e-06 0.00041 21.7 1.6 1 23 483 505 483 505 0.99

12 12 4.9e-05 0.0049 18.4 2.8 1 23 511 534 511 534 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.1	14.2	0.1	2	23	187	208	186	208	0.97
2	12	1.4e-05	0.0014	20.1	0.2	1	23	214	236	214	236	0.98
3	12	0.00063	0.063	14.9	0.8	2	23	255	277	254	277	0.94
4	12	8.7e-06	0.00086	20.7	1.5	1	23	287	309	287	309	0.98
5	12	2.7e-05	0.0027	19.2	1.4	2	23	316	337	315	337	0.96
6	12	1.8e-07	1.8e-05	26.1	0.6	1	23	343	365	343	365	0.98
7	12	1.1e-05	0.0011	20.4	0.4	1	23	371	393	371	393	0.97
8	12	0.0012	0.12	14.0	5.9	1	23	399	421	399	421	0.98
9	12	5.9e-05	0.0059	18.1	2.3	1	23	427	449	427	449	0.98
10	12	5.3e-05	0.0053	18.2	0.5	1	23	455	477	455	477	0.97
11	12	4.1e-06	0.00041	21.7	1.6	1	23	483	505	483	505	0.99
12	12	4.9e-05	0.0049	18.4	2.8	1	23	511	534	511	534	0.95

Sequence Information

Coding Sequence: atgaaatttgataaaatatgcCGAACATGTTTAACCGAAAAATCAactttaaaatcaatatttgggGCTTGCTTACCGAACATGTTGATGAGTTGTGCTTCCGTACAGGTAATAGATGGTGATGgtttaccaaataaaatatgtaCACAATGTTTACAAATGGTCAATCGAGCCTATACCTTTAAACAGCTGTGCGAAAAATCGGATGCATCTTTAAGagaatatgtaaataaaattaatttacaaaatatgaCTTTAACAACCgatcataatttattatgtaacgTAAAAAATGATCAGTTATTTGTAAACAGTGAAGTCTTGCAACAATCTTCGCTTTTTAGTGAATTATTTGGTAGTGAAACTACGCAATCATTAGTCGATAATTTTACATCACAAAATGCAAATACAGTTGTATCCGATTTAGCAGATACAATGCAAAGTTTACAAACAATTGCGGAACAATGTTTACCAGATACGTGGGATAGCGATACAAATATAATGAACACACACAGTGGTTCAGAAGATACTACATGTCACAGCTTAGAATCTTTACTTAAATGCCAGTTTTGTGAAGAATCATTTGGAGacGAATGGAGTTTAGCAGAACACATAAAAGTTCATACAGGTCATGCTAAGTATTACTGCAGTGTATGTGGTAAAGGGTATGCTACATCATTAGCTTTAacaaaacatataaataatCATGCCATAACTTCAAATCACATGAATGAGCAAATTAATGAAAGGAAAAAGGCATCCAGTTGCAATgtATGCAGTAAACAGTATGAAGAAAGTTCTTCTCTAAGGAAACATTTAAAAGATGATCATTCTGatatcaaaaatattgaaaagaaACATGTATGCTCCGTTTGTGGAAAAAGgtattcgcaaaataaatttttagtaatacACATCAGGTCTCATACAGGAGAGAGGCCACTGAGTTGTGAAACTTGCGGAAAAAATTTTTCTCTTCCAAGTTCACTGCATAAACATCGGTTAGTGCATAAtcaagaaaagaaatttaattgtaCAGTTTGTGGGAAAGCATTTAAACAGATGTCAAATGTTACAGCTCACATGCGTAGTCACACAGgtgaaaagccatttataTGTAACGTATGTGGTAAGGCATGTGCTACAAATGTAAATTTGGAAATACATAAAAGACTTCATACTGGTGAGAAACCTTATCACTGTTCCAGATGTGAAAACACATTCAATACTAGCagtcaattaaaaaaacatttcatgcGACACACAGGTGAAAAACCTTACAAATGTTGGCAATGTGGAAAATCATTTCGCCAAAAGGATACTCGTGATACCCATGTCCGATACCACACTGGAGAAAGGCCATTTGCTTGTACTTTATGTCCTAAGCGATATATTGCAGCCAGTCATCTAAGAGTTCATATGAAAGGACACACTGGAGATAGGAAATACCAGTGCCACATTTGTTCTAAGGGATTTATTCAAGCTCGAACTCTAAAAACTCATTTAGCGACTCATACCGGTGAGAGGACTTACATATGTAAATATTGTGGGCAAAGTTATTCTCAATCCAGAACATTAAATAGTCACGTAAAAGGATGTCATTCAaatgtataa
Protein Sequence: MKFDKICRTCLTEKSTLKSIFGACLPNMLMSCASVQVIDGDGLPNKICTQCLQMVNRAYTFKQLCEKSDASLREYVNKINLQNMTLTTDHNLLCNVKNDQLFVNSEVLQQSSLFSELFGSETTQSLVDNFTSQNANTVVSDLADTMQSLQTIAEQCLPDTWDSDTNIMNTHSGSEDTTCHSLESLLKCQFCEESFGDEWSLAEHIKVHTGHAKYYCSVCGKGYATSLALTKHINNHAITSNHMNEQINERKKASSCNVCSKQYEESSSLRKHLKDDHSDIKNIEKKHVCSVCGKRYSQNKFLVIHIRSHTGERPLSCETCGKNFSLPSSLHKHRLVHNQEKKFNCTVCGKAFKQMSNVTAHMRSHTGEKPFICNVCGKACATNVNLEIHKRLHTGEKPYHCSRCENTFNTSSQLKKHFMRHTGEKPYKCWQCGKSFRQKDTRDTHVRYHTGERPFACTLCPKRYIAASHLRVHMKGHTGDRKYQCHICSKGFIQARTLKTHLATHTGERTYICKYCGQSYSQSRTLNSHVKGCHSNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00399759;
90% Identity: iTF_00399759;
80% Identity: -