Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720166.1:29883313-29884923[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.3e-05 0.0053 18.2 1.1 1 23 174 198 174 198 0.93

2 11 2.8e-08 2.8e-06 28.6 1.2 1 23 229 251 229 251 0.97

3 11 3.3e-06 0.00032 22.1 0.5 1 23 257 279 257 279 0.98

4 11 5.9e-05 0.0059 18.1 0.3 1 21 285 305 285 306 0.94

5 11 0.00011 0.011 17.2 0.6 2 23 322 343 321 343 0.95

6 11 0.013 1.3 10.7 0.1 3 23 350 371 348 371 0.92

7 11 6.3e-05 0.0062 18.0 1.0 1 23 379 401 379 401 0.95

8 11 2.3e-07 2.3e-05 25.7 0.8 1 23 408 430 408 430 0.99

9 11 9.5e-06 0.00095 20.6 4.3 1 21 436 456 436 458 0.95

10 11 1.2e-05 0.0012 20.3 0.4 1 23 464 486 464 486 0.98

11 11 1.1e-07 1.1e-05 26.7 1.6 1 23 492 514 492 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.3e-05	0.0053	18.2	1.1	1	23	174	198	174	198	0.93
2	11	2.8e-08	2.8e-06	28.6	1.2	1	23	229	251	229	251	0.97
3	11	3.3e-06	0.00032	22.1	0.5	1	23	257	279	257	279	0.98
4	11	5.9e-05	0.0059	18.1	0.3	1	21	285	305	285	306	0.94
5	11	0.00011	0.011	17.2	0.6	2	23	322	343	321	343	0.95
6	11	0.013	1.3	10.7	0.1	3	23	350	371	348	371	0.92
7	11	6.3e-05	0.0062	18.0	1.0	1	23	379	401	379	401	0.95
8	11	2.3e-07	2.3e-05	25.7	0.8	1	23	408	430	408	430	0.99
9	11	9.5e-06	0.00095	20.6	4.3	1	21	436	456	436	458	0.95
10	11	1.2e-05	0.0012	20.3	0.4	1	23	464	486	464	486	0.98
11	11	1.1e-07	1.1e-05	26.7	1.6	1	23	492	514	492	514	0.98

Sequence Information

Coding Sequence: atgtGGGATTTaagacttgaaaatattaaaaaaatatgcagaATATGCTTAGAAGAACATAACGCAATGAATAATATATACcagaatgaaaatatttatcaaatgTCTATAGCAGAACTTCTCAGTAATTTCTTATCTCTTAAGATTGAAGAAGATGAGGAGTTGCCAAGCTTAATTTGTAATCAATGTGAAACGGAAGTATTCCAATTTTGCGAGTTCAAACTAAAATTAGACAAGTCGAGTAAATATTTGCAAGAATATTTAACACAGTTGGATAATACAAATACCGACATCGAACATGGAATCACAATAGATCAGGATAGTGCAGAAAACAATGTGGTTATTATTGAATATCCTTCGGAGAATGTAGAAATCTTAAGTGATGCGGAAATTACAATTGATGGTACGGTTGTGGAAGTAGTGGAAGAGTTCAGTGACAACGAGATAGAAGTGGAACAGAAAAAGGTAATAAAAGCTAAAAAGAAACCAAAAAAGATTGACGAGGAAAAACACAACAGTTACATATGCAAAAAATGCAACGAGACCTTtgatagtaaaataaaattaacggTTCATCTAAGAAAGCTCTTGCATTATTCGCAAAAAACTGTAACCTGTTCGCAGTGTAAATTATTGGTGCCTGTACAAAATTACAAAGGTCATTTTCTGAAACATTCTTCCGATTTTCGTTGTGAAATATGTGGTAAAgtattttccaataattttaatctaaaaagaCATTTATATGTGCATACGAAACAAACTCCATTTTCTTGTGATTTGTGCGGGGCAAAGTTTGCAAGGCAAGATAAATTAAAATCGCATCTTATGACACATTCATATGAGGTACCATTCACCTGTGATGCTTGTGGTCAACGGTTTCGACGTAAAAGTGCATTAGTGCAAcatcaagaaaaatattgcaGCGGTGAACAAAGtgaacaaaaatataaacgttCATTATCGTGTGATATTTGTTCAAAATCGTTTGCTTTATCCTCATCCTTAAGAACTCATAAATTACTGCATACGGATGATCGTGTAATTTGCGGTACCTGTGGTAAACCTTATCCCAATGAAAAGAAACTAAGCGAACATAAATTACTGGTACATGCTAAAAAAAAGGGGaaagaatttttatgtaatttttgtgCAAAGCAATATAGCAACAAAGGGCTATTACAAAGACATATATTAACTCATTTGGGTCTTTCTAAAAGTTATAAATGTAAAGTTTGTAACAAATCCTTTACTCAATCGGGGTCTTTAGCATTGCATTTAAAAatacacactggggaaaagcctttcgTATGTCACGTTTGTTCGAAAGCGTTTAATAAACCAAGCAATCTGCAACGTCATTTAAGATGTCATGATAATATTCGACCCTATGTTTGTCCTGTTTGCGAAAAATGTTTTGGGGTTAAACAATCCCTGATTGTTCATACACGGATtcatactggggaaaagccttttgaaTGTTCGATTTGTAGTAAAAAATTTGTAGATCGGTCTTCTTTAACAAAACATATAAAAACTCATAGCAGACAGAACTAA
Protein Sequence: MWDLRLENIKKICRICLEEHNAMNNIYQNENIYQMSIAELLSNFLSLKIEEDEELPSLICNQCETEVFQFCEFKLKLDKSSKYLQEYLTQLDNTNTDIEHGITIDQDSAENNVVIIEYPSENVEILSDAEITIDGTVVEVVEEFSDNEIEVEQKKVIKAKKKPKKIDEEKHNSYICKKCNETFDSKIKLTVHLRKLLHYSQKTVTCSQCKLLVPVQNYKGHFLKHSSDFRCEICGKVFSNNFNLKRHLYVHTKQTPFSCDLCGAKFARQDKLKSHLMTHSYEVPFTCDACGQRFRRKSALVQHQEKYCSGEQSEQKYKRSLSCDICSKSFALSSSLRTHKLLHTDDRVICGTCGKPYPNEKKLSEHKLLVHAKKKGKEFLCNFCAKQYSNKGLLQRHILTHLGLSKSYKCKVCNKSFTQSGSLALHLKIHTGEKPFVCHVCSKAFNKPSNLQRHLRCHDNIRPYVCPVCEKCFGVKQSLIVHTRIHTGEKPFECSICSKKFVDRSSLTKHIKTHSRQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -