Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720166.1:27310403-27312786[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3e-05 0.003 19.0 0.9 1 23 191 213 191 213 0.97

2 12 9.2e-05 0.0092 17.5 0.5 2 23 218 239 217 239 0.97

3 12 4.6e-07 4.6e-05 24.8 0.2 1 23 245 267 245 267 0.99

4 12 0.0011 0.11 14.1 1.9 5 23 277 295 273 295 0.93

5 12 5.8e-05 0.0057 18.1 0.1 3 23 303 323 301 323 0.96

6 12 2.3e-06 0.00023 22.5 1.3 1 23 329 351 329 351 0.99

7 12 1.2e-07 1.2e-05 26.6 0.6 1 23 357 379 357 379 0.99

8 12 0.0049 0.49 12.1 1.4 1 23 385 407 385 407 0.96

9 12 3.2e-07 3.2e-05 25.2 0.1 1 23 413 435 413 435 0.99

10 12 7e-05 0.007 17.9 2.3 3 23 443 463 441 463 0.98

11 12 0.00033 0.032 15.8 0.4 1 23 469 491 469 491 0.97

12 12 9.2e-05 0.0092 17.5 0.2 3 23 499 519 497 519 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3e-05	0.003	19.0	0.9	1	23	191	213	191	213	0.97
2	12	9.2e-05	0.0092	17.5	0.5	2	23	218	239	217	239	0.97
3	12	4.6e-07	4.6e-05	24.8	0.2	1	23	245	267	245	267	0.99
4	12	0.0011	0.11	14.1	1.9	5	23	277	295	273	295	0.93
5	12	5.8e-05	0.0057	18.1	0.1	3	23	303	323	301	323	0.96
6	12	2.3e-06	0.00023	22.5	1.3	1	23	329	351	329	351	0.99
7	12	1.2e-07	1.2e-05	26.6	0.6	1	23	357	379	357	379	0.99
8	12	0.0049	0.49	12.1	1.4	1	23	385	407	385	407	0.96
9	12	3.2e-07	3.2e-05	25.2	0.1	1	23	413	435	413	435	0.99
10	12	7e-05	0.007	17.9	2.3	3	23	443	463	441	463	0.98
11	12	0.00033	0.032	15.8	0.4	1	23	469	491	469	491	0.97
12	12	9.2e-05	0.0092	17.5	0.2	3	23	499	519	497	519	0.98

Sequence Information

Coding Sequence: ATGGAAGTATTAGATATTATCGCTGTAATTAGTGATGTAGATAAAATATGTAGAACATGTTTGGCGGAAAAGAACCAAACCGAGCTTCACTGTTTATTCGACAACGCTCTGGACAATATGTTGTGGAAATTAGTCGGTTTAATGAAGCCAGTCCTAGGAGATGGTTTACCAAGTTACATGTGTGAGCAATGCATCAAACGACTAAACACCGCTCTTACTTTTAAAGAAGAGTGCCAAAACGCTGAAATACGATTACGGCACTTATTATTAGTGGCACCACCCCAAAAATCTGATACTACATTAAAGGAGCTCTTATTAACAAACTTAGAATTAAACATTAAACCTAAAATTGAACATTCAAGTTCAGATGTTGCTGTTCAGACAGAGAAAAGTGTATTTAAGAAACGTAAAAAACGAAAGCAAAACCAAAATTGGTCTTCACCGTATTGGTCTTCAGACGATGAACTTTTTATTGATGCACCAAATGAAGATGATTCGAAAATTAACGAAATGGATATACAGTCAGTACAAATAGATAAACAGGAAGAAAAACCATCTTtagaatcaaaatttaaatgtgtaaaatgtaaaaaggtATTCAGATCGGCTACAGGCCTAAGAGTACATTTAGTAAAGcatgggaaaaaattaaaatgtgaaGTGTGTGGGAAACAATTCGGGTtaattaaacttttaaataaacatatgaAAATGCATAAAGATTATAAACCATACGTTTGTAAAGTCTGTAAAAAAGCATTTACTGCTGCTggtaatttatcaaaacataTGCGAGTACATGGAGGAGAAAAGAGACATTTATGTATTACTTGCGGAAGAAGATTCTTTGAACCTGGCCATTTAGCAGTACACATGAGGACACATACGGGAGAAAAGCCAATAATTTGTAATGTTTGTGGAAAACGCTTTGCAGATCCTCATGGGTTAGTAGCTCATAATAAAATTCACACGGGGGAACGTAATTATGAGTGTAAAACATGTGgtaaAAGATTTGCTCATTCTTTTGTATTAACTGCTCATATAAGAAttcacactggggaaaagccttatcGATGTTCTATTTGTGGAGCCTCTTTTGCTACTAGTTCATATTTAACCATTCATAGAAGGACTCATACTCAGGAAAAACCTTTTTGTTGTGAATCTTGTCCTAAAGCTTTTGTAAGTAGATGTGCATTAGTTGCGCATAATATGATTCACACAGGGGAAAAGAGGTTTCAATGTAATATTTGTGGAAAAAGGGTTGCCAGAGCTGCTGATTTAAACATCCATATGAGATCACATACTGgtgAAAGACCGTATGGTTGTGATCAGTGTCCAAAACGATATCACACATCAAGCAATCTTTCAGCACATAAACGAACTcatttaggaataaaaaatcatatatGTACAGTATGTGAAAAAGCTTTTGGTGATGCTCGAACTTTAAAAGGTCATACGCGGatacacactggggaaaagccttacgGTTGCCAAATTTGTGGGAATAGATATTCTCAATCTGGTCAACTTGCTGCACATAGGAAGACTCATCTTAATCAATCAGAACACTCCAAATCTAATaagattaatcaaaaaataaatcaaatggAAGTGATAAGTTCTAATCAAAAACTAGAGGCGCTTGTTATTCATCCTCAACTTTCCGATACAAATATGGGGCCACCAAATATTCTTACACCTGTAAGACAACTTGTACAAATGTTTAATCCTAACGAGCaattaaatcaacaaaaaatGAGTAATATTGAACAATCAACAATTCTTGCTTCAGGACTTGTTCCTATTTTGAAAATAGATCCGAATGAGACATCAAATTTTTATTCTGAACTAAATCCACTTAAACTGGAACAAACCAAATCACAAATACTTGTTCCTTTAAATTCACAACATGATCAACTTGAGACATTAACTGCATGTTCACATTTGCAAAATGAACCTAAATCAACCACTATTGAagtttttattgattaa
Protein Sequence: MEVLDIIAVISDVDKICRTCLAEKNQTELHCLFDNALDNMLWKLVGLMKPVLGDGLPSYMCEQCIKRLNTALTFKEECQNAEIRLRHLLLVAPPQKSDTTLKELLLTNLELNIKPKIEHSSSDVAVQTEKSVFKKRKKRKQNQNWSSPYWSSDDELFIDAPNEDDSKINEMDIQSVQIDKQEEKPSLESKFKCVKCKKVFRSATGLRVHLVKHGKKLKCEVCGKQFGLIKLLNKHMKMHKDYKPYVCKVCKKAFTAAGNLSKHMRVHGGEKRHLCITCGRRFFEPGHLAVHMRTHTGEKPIICNVCGKRFADPHGLVAHNKIHTGERNYECKTCGKRFAHSFVLTAHIRIHTGEKPYRCSICGASFATSSYLTIHRRTHTQEKPFCCESCPKAFVSRCALVAHNMIHTGEKRFQCNICGKRVARAADLNIHMRSHTGERPYGCDQCPKRYHTSSNLSAHKRTHLGIKNHICTVCEKAFGDARTLKGHTRIHTGEKPYGCQICGNRYSQSGQLAAHRKTHLNQSEHSKSNKINQKINQMEVISSNQKLEALVIHPQLSDTNMGPPNILTPVRQLVQMFNPNEQLNQQKMSNIEQSTILASGLVPILKIDPNETSNFYSELNPLKLEQTKSQILVPLNSQHDQLETLTACSHLQNEPKSTTIEVFID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -