Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720164.1:320841-322710[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.2e-06 0.00032 22.1 3.7 3 23 174 194 172 194 0.97

2 12 0.00013 0.013 17.0 0.2 1 23 200 222 200 222 0.96

3 12 0.00011 0.011 17.2 0.5 2 23 259 280 258 280 0.91

4 12 9.4e-05 0.0094 17.5 5.9 2 23 292 313 291 313 0.97

5 12 2e-05 0.002 19.6 0.9 1 23 319 341 319 341 0.96

6 12 1.8e-07 1.8e-05 26.0 1.9 1 23 347 369 347 369 0.98

7 12 5.6e-06 0.00056 21.3 0.4 1 23 375 397 375 397 0.95

8 12 0.00034 0.034 15.7 2.3 3 23 405 425 403 425 0.96

9 12 9.8e-06 0.00097 20.6 2.9 1 23 431 453 431 453 0.98

10 12 0.00012 0.012 17.1 0.8 1 23 459 481 459 481 0.99

11 12 2.8e-06 0.00028 22.3 1.1 1 23 487 509 487 509 0.98

12 12 8.9e-07 8.9e-05 23.8 0.9 1 23 515 537 515 537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.2e-06	0.00032	22.1	3.7	3	23	174	194	172	194	0.97
2	12	0.00013	0.013	17.0	0.2	1	23	200	222	200	222	0.96
3	12	0.00011	0.011	17.2	0.5	2	23	259	280	258	280	0.91
4	12	9.4e-05	0.0094	17.5	5.9	2	23	292	313	291	313	0.97
5	12	2e-05	0.002	19.6	0.9	1	23	319	341	319	341	0.96
6	12	1.8e-07	1.8e-05	26.0	1.9	1	23	347	369	347	369	0.98
7	12	5.6e-06	0.00056	21.3	0.4	1	23	375	397	375	397	0.95
8	12	0.00034	0.034	15.7	2.3	3	23	405	425	403	425	0.96
9	12	9.8e-06	0.00097	20.6	2.9	1	23	431	453	431	453	0.98
10	12	0.00012	0.012	17.1	0.8	1	23	459	481	459	481	0.99
11	12	2.8e-06	0.00028	22.3	1.1	1	23	487	509	487	509	0.98
12	12	8.9e-07	8.9e-05	23.8	0.9	1	23	515	537	515	537	0.98

Sequence Information

Coding Sequence: atggaaGAAAGTGTCCTACCAAACGTATGTCGTGCTTGTTTAACTGCAGAAGGTGAATTCCAATCAGTTTTTGTACCAGACGAGAGCAGTGGCTTGACAATCCACTTGGCAGAAATGATTATGGCGTATGCTGCCGTACAGATTACACTTGGAGATGGTCTTCCAGAACAAATTTGTGTACCTTGTGCCGAAAAAGCAGTTCAcatgtatttatttaaacaacgcTGCGAAGAATCCGATGCTGCATTACGTCAACAATTGGGTAAATCTCCTTTGGATAAAACCTACAGCATAGCCGAGGAACAACGGTTAGCTGTTGAAGCCCTAAAGAACATAGACCCATACTCGATCGATGTTATTATTAAGCCCGAAATCGGTATCGACAATgaagaacaaaatcaaattCATATGGAAGACATGCAAGTGGTAGAAACTGATTTCGAGGATTCTTGCGAAACAAGCGATCAGGAATCAGAAACAGAAACTGTAGAAATTAAAACTAAACGCGAACCGATCGCTTGCGACATATGCCATAAAAGTTTTAACCGTGTTAGTCATTTAAATAGACATAAGAGGGTCCACGCACTCCAAAAACAATTCGCATGCACTGCCTGTAACAAAACTTTTGCCAGGAGCGATGTACTTCTTCGACATCTAAGCGTACACGATATTAAAATAGAGGAACAAATGTCACCTTTCGAAACTATATTGGGACAGGAAATAATAGCCGATAATTTAATCGAAGTGAAATCGGAAGAAATAGTTACAGATTTAAAGTGTATGCCCTGCGATAAATCATTTTCTAGTAAAGACGATTTTAATACTCATATGGTAATACATGAATCGAGACCTAGAAGTACACCAGGTTCGTTGAGATGTAcccattgtaataaaaaatttaataaagttgCCCATTTAACTAGACACTTGAAAATACATGCAGCTATTAAACCACATATTTGTGATTTGTGTCATAAGGGGTTTGCGCGTGCCGAGCAACTGGTTAATCATATGAATGCACATTCAGGAGTTAAGCCGCATGTTTGTACTATATGTAATAAAGGTTTTAATCAAGTCTCAAATTTAAAAGACCATATGAGAACGCACAATGGAGAAAAGCCATTTTTATGTTCGATTTGTGGCAAGGGTTTTAATCAGTTGGGAAATTTACGCCAGCATACAATAAGACACAGCGGGATAAAAGCACACCTTTGTAGTACATGCGGAAATGGTTTTGCAAGTAAAGGTGAACTTTGCGCACATCTTCGGAAACACACGGGTGCAAGACCATTTATTTGTCAAGTCTGCAATCACGGTTTTACAACGTCAAGTTCCTTGACAAAACACAAACGGATCCATTCTGGAGAAAAGCCTTACGAATGTGAAGTATGCAAAATGAAGTTTTCCCGATCGGGAATTCTTGCCCGACACAAACGTACTCACACAGGAGAGAAACCATATGTGTGTAAATTCTGTACAAAAGCTTTCTCGCAGTCTAACGATCTCAGTTCACATTTACGCatacacactggggaaaagccctACATATGTGATACTTGCGGACAAGCCTTTAGGCAAAGTTCAGCACTTAAGACTCATAAAAAGACCCACATAGATCGTGCTTCAATTCTTGAAATTGAACGGGCAAGAAATCTTGTACCGATGATACACAGTACCTTTTTAAATGCTGCATTACCGTGA
Protein Sequence: MEESVLPNVCRACLTAEGEFQSVFVPDESSGLTIHLAEMIMAYAAVQITLGDGLPEQICVPCAEKAVHMYLFKQRCEESDAALRQQLGKSPLDKTYSIAEEQRLAVEALKNIDPYSIDVIIKPEIGIDNEEQNQIHMEDMQVVETDFEDSCETSDQESETETVEIKTKREPIACDICHKSFNRVSHLNRHKRVHALQKQFACTACNKTFARSDVLLRHLSVHDIKIEEQMSPFETILGQEIIADNLIEVKSEEIVTDLKCMPCDKSFSSKDDFNTHMVIHESRPRSTPGSLRCTHCNKKFNKVAHLTRHLKIHAAIKPHICDLCHKGFARAEQLVNHMNAHSGVKPHVCTICNKGFNQVSNLKDHMRTHNGEKPFLCSICGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELCAHLRKHTGARPFICQVCNHGFTTSSSLTKHKRIHSGEKPYECEVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLSSHLRIHTGEKPYICDTCGQAFRQSSALKTHKKTHIDRASILEIERARNLVPMIHSTFLNAALP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00978617;
90% Identity: -
80% Identity: -