Basic Information

Insect: Hemicrepidius niger
Gene Symbol: -
Assembly: GCA_963082805.1
Location: OY720163.1:2677488-2683601[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.011 1.1 10.9 7.7 1 23 212 234 212 234 0.99

2 20 0.0037 0.37 12.4 2.1 1 23 240 262 240 262 0.98

3 20 0.041 4.1 9.2 1.5 1 22 268 289 268 292 0.91

4 20 0.011 1.1 10.9 0.5 1 23 304 326 304 326 0.97

5 20 0.00011 0.011 17.2 7.5 1 23 332 354 332 354 0.99

6 20 1.6e-05 0.0016 19.9 0.9 1 23 360 382 360 382 0.98

7 20 0.038 3.8 9.3 0.7 1 20 396 415 396 417 0.90

8 20 0.0006 0.059 15.0 5.8 1 23 535 557 535 557 0.99

9 20 0.024 2.4 9.9 5.5 1 23 563 585 563 585 0.98

10 20 0.0039 0.39 12.4 0.6 1 23 600 622 600 622 0.97

11 20 0.00033 0.033 15.7 6.3 1 23 628 650 628 650 0.98

12 20 3.7e-05 0.0037 18.8 2.7 1 23 656 678 656 678 0.99

13 20 8.2e-07 8.2e-05 23.9 0.8 1 23 684 706 684 706 0.98

14 20 0.74 74 5.2 4.1 1 23 711 733 711 733 0.98

15 20 0.012 1.2 10.9 2.1 1 23 753 775 753 775 0.98

16 20 0.00052 0.052 15.1 4.2 1 23 781 803 781 803 0.99

17 20 1.2e-05 0.0012 20.3 0.4 1 23 809 831 809 831 0.98

18 20 0.00091 0.09 14.4 3.3 2 23 838 859 837 859 0.97

19 20 3e-07 3e-05 25.4 2.3 1 23 865 887 865 887 0.99

20 20 6.2e-06 0.00062 21.2 4.0 1 23 893 916 893 916 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.011	1.1	10.9	7.7	1	23	212	234	212	234	0.99
2	20	0.0037	0.37	12.4	2.1	1	23	240	262	240	262	0.98
3	20	0.041	4.1	9.2	1.5	1	22	268	289	268	292	0.91
4	20	0.011	1.1	10.9	0.5	1	23	304	326	304	326	0.97
5	20	0.00011	0.011	17.2	7.5	1	23	332	354	332	354	0.99
6	20	1.6e-05	0.0016	19.9	0.9	1	23	360	382	360	382	0.98
7	20	0.038	3.8	9.3	0.7	1	20	396	415	396	417	0.90
8	20	0.0006	0.059	15.0	5.8	1	23	535	557	535	557	0.99
9	20	0.024	2.4	9.9	5.5	1	23	563	585	563	585	0.98
10	20	0.0039	0.39	12.4	0.6	1	23	600	622	600	622	0.97
11	20	0.00033	0.033	15.7	6.3	1	23	628	650	628	650	0.98
12	20	3.7e-05	0.0037	18.8	2.7	1	23	656	678	656	678	0.99
13	20	8.2e-07	8.2e-05	23.9	0.8	1	23	684	706	684	706	0.98
14	20	0.74	74	5.2	4.1	1	23	711	733	711	733	0.98
15	20	0.012	1.2	10.9	2.1	1	23	753	775	753	775	0.98
16	20	0.00052	0.052	15.1	4.2	1	23	781	803	781	803	0.99
17	20	1.2e-05	0.0012	20.3	0.4	1	23	809	831	809	831	0.98
18	20	0.00091	0.09	14.4	3.3	2	23	838	859	837	859	0.97
19	20	3e-07	3e-05	25.4	2.3	1	23	865	887	865	887	0.99
20	20	6.2e-06	0.00062	21.2	4.0	1	23	893	916	893	916	0.98

Sequence Information

Coding Sequence: ATGGATGGAGATATAAAGCCTGAAGTTAAAAGTGAGACCTGGTTGCCCAATACAACCGATTGCACATATAACGTTCTGCAAGTCGATGAAATCAAGAATGAATACACGGAACACGAATCAGATACCCTAAAAGAAGAAGTTACGTGTTGTCAACCATTACGGGTTGACATTAAATTGGAAACTCCCGATCTACAATATGACAATGTTTTCGTGGAGTCGGAATTAATCAAAAATGAGTTTGGTAACGACCCAGAAATTCCTGAAAGTCAAACGATAGAAGAGCATACTGAAACTAAACGatccaAGCCTTCAAGAAAATTTGTCTTACCAGTGAGACCCAGGATGGATGTAAAGGAAGAAATAAAGTCTGAAGTGTTAAGTGAGACCTGGTTGTCCAGTAGTAACGATTTGCAAGTGAAGGAATTCAAAAGTGAATTTAACGAAGCCGAGTTGGAAGCTCCTATAAAAGAAGATCCACTGATGTTAGACATCAAAACAGAAGCTCCTGATCAGGAGTACGATGTTACCATTGACAACACCTTCTTTATCAAAtcagaattaataataaaagaagagAATGATATAGAAACTCCTAATAATGAAACAATTCAAGAGTCTACTAACGGTAAACGCTTTCAATGTAGTGTTTGCAGTTATAAATGTAGATACCGTTGCGAACTCCAAAGACATGTTAAAACTCATACAGGAGAGAAACCGTTCAGCTGTAGTCTGTGTGATTACACATGCCTACGAAAAGGTGGTTTAAACCAACACATGAAAATTCATACTGGAGAAAAACCCTTCAACTGTAGTATGTGTGATTTTTCAagtttacgaaaaaataatttaaatcaacaCATGAAACTGAAAGGACATAGTGGGGCGAAGCCGTACGAAAGTGCTGAAAAATTCTATTGCTCTGTTTGTGATTTTGTATCGCTACGCAAAGATAGCTTACGACGACACGTGATAATGCATAcaggggaaaagccttttacaTGCAATCAATGtggttcaaaatttacacagAAATGTCATTTACAACAGCATATAAAAACacatacaggagaaaaaccgTTTCAATGTGAGATATGCATGataaaattttctagaaataCAAACTTACGGGCCCATATGAAACTACATTCTGTGGATGACTGTGGAaatcattttgtggaaaaaccCTTCAAATGTGATCAATGTGATTATTCTAGCACAAGAAAAGCGACTTTAGAATTTCATATCACGTATAGATCGAAACACCGATTTTGTTTTACCATGGATGTAAAGGAAGATGTAAAGCCTGAAGTTAAAAATGAGATCTGGTTGTCCAATACTAGTGATTACACTTACCATGATTTGCACGGAAATGAATTTAAGAAGGAATTTAACGGAAGCGAAATGAAAACCCATATAAAAGAAGAAGTTCCTTCTCAACCATTGCTGTTGGGCATAAAAACAGAAGCTCGTGATTTACAAGACGATATTAATATCAACAATGCTACCCTTATCACGtcggaattaataataaaagaagagTTCAACACGGAAACCGAAATTCCTAATAATCAAACAATTCAAGTGCCTGGTTCAACGAAACTCTATCAATGTGATGTTTGCAATTTTAAATGTAGATACAATAGTGGATTTAAAAAACACATGAAAAGTCACAGCAAAGAGAACCAATTCAAATGTAGTGCGTGCCACTATACTTGTGTACAAAAGGATGTTTTAAAACAACATCTGAAAAGTCATATTGAAGAAAAACCACACAAAACTAAAGTACGTGGTTATAAATTCAACTGTACTGTATGTGATTTTATTACGCTTCGTAAAGACGGTTTACAGCGACACATGCAAATGCATTccggagaaaagccttttacaTGCAACGTATGCGATAGTAAATTTTCACAGAAATGTCATTTACAACagcatttaaaaatacatacagGGGAGAAACCTTTCAAATGCGATCAATGCGATTATAGTAGTACAAGACGTTCGACGATTCAAAATCATATGCGAcggcacactggggaaaagccttttgaGTGCAACGTTTGTGGAAGAACATTTATACAAAACTTTCAGTTAAAACTCCATATGCTGAGTCACACAACGGAAAAATACTGCTGCCCTAAATGTAATTACAAAACCAACCTGGAGATTAAGTTACAATTCCATATGAGAACCCATTCGCCTACAGATCTAGAATCTAGTTTGGATCTGGAAACCGAAACAGGGAGAACATTTCACAAATGCTCAGAATGTGATTATATATCTCTACGCAAACCTGATTTTCAGCGACATATGAAAATTCATACGGGAGAGAAACCTTTCACGTGCAACGTATGCGACTACAAATGTATAGACAAAGGTCGGCTAACAAAACATAAAAGGACCCATACAAGAGAAGATCTTTTCAAGTGTAATATATGTGATTTTAGTTCTATACGGAACTCAAGTCTAGAACTGCATATGATGATtcatactggggaaaagcctttgaaatGTCGTTTATGTGATTACAGGTGTATTCAGAGAACTGGTCTAAAATTACACATGCGTACTCATACTGGGGAAAGACCTTACAAATGCAATCTGTGTGATTATAGATTTACACAAAAAACTGCCTTGACACAACATATAAGAACTCATACACGCGAAAAACCTTTCAAATGTAACGAATGCGACTATAGCTGtatccagaaaaaaaatttagaaaggcaTATAAAAAGGCAACATgctaaattattgtaa
Protein Sequence: MDGDIKPEVKSETWLPNTTDCTYNVLQVDEIKNEYTEHESDTLKEEVTCCQPLRVDIKLETPDLQYDNVFVESELIKNEFGNDPEIPESQTIEEHTETKRSKPSRKFVLPVRPRMDVKEEIKSEVLSETWLSSSNDLQVKEFKSEFNEAELEAPIKEDPLMLDIKTEAPDQEYDVTIDNTFFIKSELIIKEENDIETPNNETIQESTNGKRFQCSVCSYKCRYRCELQRHVKTHTGEKPFSCSLCDYTCLRKGGLNQHMKIHTGEKPFNCSMCDFSSLRKNNLNQHMKLKGHSGAKPYESAEKFYCSVCDFVSLRKDSLRRHVIMHTGEKPFTCNQCGSKFTQKCHLQQHIKTHTGEKPFQCEICMIKFSRNTNLRAHMKLHSVDDCGNHFVEKPFKCDQCDYSSTRKATLEFHITYRSKHRFCFTMDVKEDVKPEVKNEIWLSNTSDYTYHDLHGNEFKKEFNGSEMKTHIKEEVPSQPLLLGIKTEARDLQDDININNATLITSELIIKEEFNTETEIPNNQTIQVPGSTKLYQCDVCNFKCRYNSGFKKHMKSHSKENQFKCSACHYTCVQKDVLKQHLKSHIEEKPHKTKVRGYKFNCTVCDFITLRKDGLQRHMQMHSGEKPFTCNVCDSKFSQKCHLQQHLKIHTGEKPFKCDQCDYSSTRRSTIQNHMRRHTGEKPFECNVCGRTFIQNFQLKLHMLSHTTEKYCCPKCNYKTNLEIKLQFHMRTHSPTDLESSLDLETETGRTFHKCSECDYISLRKPDFQRHMKIHTGEKPFTCNVCDYKCIDKGRLTKHKRTHTREDLFKCNICDFSSIRNSSLELHMMIHTGEKPLKCRLCDYRCIQRTGLKLHMRTHTGERPYKCNLCDYRFTQKTALTQHIRTHTREKPFKCNECDYSCIQKKNLERHIKRQHAKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -