Hnig020411.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720163.1:2780726-2783922[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0012 0.12 14.0 1.2 1 20 68 87 68 89 0.95
2 18 0.0067 0.67 11.6 7.0 2 23 95 117 94 117 0.96
3 18 4.5e-05 0.0045 18.5 2.8 1 23 145 167 145 167 0.99
4 18 1.9e-07 1.9e-05 25.9 3.9 1 23 173 195 173 195 0.99
5 18 1e-05 0.001 20.5 3.4 1 23 201 223 201 223 0.98
6 18 1.6e-05 0.0016 19.9 3.5 1 23 229 251 229 251 0.99
7 18 0.0018 0.18 13.5 0.7 1 21 332 352 332 353 0.94
8 18 0.0019 0.19 13.4 5.7 2 23 359 380 358 380 0.97
9 18 3.4e-05 0.0034 18.9 3.7 2 23 387 408 386 408 0.97
10 18 0.00048 0.048 15.2 2.8 1 23 414 436 414 436 0.97
11 18 1.3e-05 0.0013 20.1 4.1 1 23 442 464 442 464 0.99
12 18 9.5e-05 0.0095 17.5 3.0 2 23 471 492 470 492 0.97
13 18 0.0046 0.46 12.1 4.4 1 23 498 520 498 520 0.99
14 18 0.0012 0.12 14.0 4.6 1 23 526 548 526 548 0.99
15 18 0.86 86 5.0 1.2 1 23 554 576 554 576 0.96
16 18 1.4e-06 0.00014 23.3 2.9 1 23 582 604 582 604 0.99
17 18 6.9e-05 0.0069 17.9 2.8 2 23 611 632 610 632 0.97
18 18 0.00082 0.082 14.5 1.5 1 23 638 660 638 660 0.98

Sequence Information

Coding Sequence
ATGTCTAGGTTAGTCGTCTTATATAGGGATATAAAAGAAGAAGATATTAATTCTCAAATAAAGTCGGAAATTCCACATATTGGGCTTGGAATTGTAACAGTTGAAGATATAACCATCAAGGTTGAGCCTTTGATGAAAGAAGAATTGGATATACAAGATGAAATTGATCCATTAGCTACGGATCTTCCTATCGAAGAACATTTCTATTGTGATTTGTGTTACACCAAATTTACGTCAAAGGGTAGTTTACGGCAGCACCTGACCCAGGAATTAATTCCACTTCAGTGCAATAAATGCAACTGGAAATGTATACGAAAATGTATGCTAAAAGAACATATGAAGAAGACGCATCCGGGAGAAACCCCCATTGAATGTAGAGAATGTGAAAGCCAACTACAGTTCGATAATCAGACTCACCCGGCTAAGAAACCATTCAAATGCGATCTATGCAATTatagttctaaaaaaaaatctaatctaCAAATCCATAAAATGACgcatacaggagaaaaacctttcCAATGTACTATTTGTGATTATAGATTTACACACAAAAGTAGTTTGACGCAACACATGATAACCCATACTGGAGAAAAACGTTTCGAATGTTTCATCTGCAATTGTAAATTTATGCGCAATAGTAACTTGCAAGTTcacatgaaaatacattccGGTGAGAAGCCTTTCAAATGTAGTATCTGTGATTATAGATCTACCCATAAAAGTAGTCTGAGAGGACATATGATGACCCATACTGGAGAGAAACCTGTTGCATGTGTTATTTGTAATCGCAAGTTTTTGCGCCAGATCAAACAAGAAGATACCGGAATTCAAGACTCGTTAAACTTTAAGTCTGATCTTCCTGATATTAAATGTGGAATTATAGAAAGTATCGAGGATATACACAACAAGTCTTTGGTAAGTGAGGAATTAGATATAAAAACTGAAATTGCGTCAACATCAACAGACGCCGCAATCGATTATGTTGAATGTTTCTATTGTGGTTTGTGTGATACCAAATTTACATTAAAGCGGAGTTTACGACAACATCTGATCCGGGAAATAAATCCACTGCAGTGCAGTCTATGTGATTATGAATGTATAAGAAAATGTATGCTAAAGCAACATATGAAAACGCATGCAGGAGAAACCCCTCTTCAATGTAAAGAATGTGATTATAAGTGTAATAAGAAAAATCAGTTAGAAGTGCATATGCGAACTCACACTGGGGAGAAGCCACATAAGTGCagtatatgtgattatagatctAAGTACAAAAGTAGTGTAACACGACATATGGTAATCCATGTTGGAGAAACTTCTTTCAAGTGCAGTTTATGTGATCTTACTTTTAAACACAGATCTACTCTTCGAACACATGTATTGACCCATACCGGACAAAAGCCTCTGGAATGTAGTAGATGTGATTATAAATCTACACACAAAGGGAGCTTAACACGACACATGATGACTCATACCGGGGAAAAACGTTTTCAGTGCAATTTATGTGATTACGAATCCATACACAAAAATCACATAACACGACATTTGATGACCCAtactggagaaaaacctttcaaGTGCAATTTATGTGATTATAAATCTACACATAAAAATTACTTAATACAACATACTATGACCCATAGTGCAGAAAAATTATTCAAGTGTAAAGCTTGTGATTATGAGTCGACACACAAAAGTCGTATAGCACCACATATGATCACACACACTGGGAAGAAACCTTTCAAGTGCAATTTATGTGATTATAGTTTTAAATATAAGTCGACTCTTCAAACACATGTAATGACTCACACAGGAGAGAAGCCTCTGGAATGTAAGAAATGTGATTATGTATCAACACACAAAGGTAGCTTCAGACGACACATCATGACTCAtactggagaaaaaccttttaagtGCAATATATGTGACTATGAATCCATATACAAAAATCATATAACACGACATATGGCTATCCATACGACCCAAGAAATAACTCTCCAATGCAAAGTGTAA
Protein Sequence
MSRLVVLYRDIKEEDINSQIKSEIPHIGLGIVTVEDITIKVEPLMKEELDIQDEIDPLATDLPIEEHFYCDLCYTKFTSKGSLRQHLTQELIPLQCNKCNWKCIRKCMLKEHMKKTHPGETPIECRECESQLQFDNQTHPAKKPFKCDLCNYSSKKKSNLQIHKMTHTGEKPFQCTICDYRFTHKSSLTQHMITHTGEKRFECFICNCKFMRNSNLQVHMKIHSGEKPFKCSICDYRSTHKSSLRGHMMTHTGEKPVACVICNRKFLRQIKQEDTGIQDSLNFKSDLPDIKCGIIESIEDIHNKSLVSEELDIKTEIASTSTDAAIDYVECFYCGLCDTKFTLKRSLRQHLIREINPLQCSLCDYECIRKCMLKQHMKTHAGETPLQCKECDYKCNKKNQLEVHMRTHTGEKPHKCSICDYRSKYKSSVTRHMVIHVGETSFKCSLCDLTFKHRSTLRTHVLTHTGQKPLECSRCDYKSTHKGSLTRHMMTHTGEKRFQCNLCDYESIHKNHITRHLMTHTGEKPFKCNLCDYKSTHKNYLIQHTMTHSAEKLFKCKACDYESTHKSRIAPHMITHTGKKPFKCNLCDYSFKYKSTLQTHVMTHTGEKPLECKKCDYVSTHKGSFRRHIMTHTGEKPFKCNICDYESIYKNHITRHMAIHTTQEITLQCKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-