Hnig020381.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720163.1:2648322-2651777[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00022 0.022 16.3 0.6 1 21 112 132 112 133 0.94
2 17 0.00018 0.018 16.6 4.4 2 23 139 160 138 160 0.97
3 17 0.089 8.9 8.1 0.7 1 20 272 291 272 293 0.95
4 17 0.034 3.4 9.4 5.8 2 23 299 320 298 320 0.97
5 17 9.2e-05 0.0092 17.5 4.0 1 23 326 348 326 348 0.98
6 17 1.6e-05 0.0016 19.9 0.9 1 23 354 376 354 376 0.98
7 17 7.5e-06 0.00075 20.9 0.9 2 23 383 404 382 404 0.97
8 17 0.0002 0.02 16.4 5.3 2 23 411 432 410 432 0.97
9 17 1.1e-06 0.00011 23.5 1.0 1 23 438 460 438 460 0.99
10 17 5e-06 0.0005 21.5 4.4 1 23 466 488 466 488 0.99
11 17 0.0001 0.01 17.4 3.8 1 23 494 516 494 516 0.99
12 17 9.3e-06 0.00093 20.6 5.4 1 23 522 544 522 544 0.99
13 17 2.8e-05 0.0028 19.1 2.9 2 23 551 572 550 572 0.97
14 17 8.3e-06 0.00083 20.8 6.2 1 23 578 600 578 600 0.99
15 17 2.5e-05 0.0025 19.3 2.5 1 23 606 628 606 628 0.98
16 17 9.2e-06 0.00092 20.7 8.2 1 23 634 656 634 656 0.99
17 17 5e-06 0.0005 21.5 3.3 1 23 662 684 662 684 0.98

Sequence Information

Coding Sequence
ATGGACGTGAGTGGAGATGTAAAATGTACAGTTGTAGAAGAAATCTGGTTACCGGAAACTCAGGATAACACGGACGAAGTTTGGCATCGGAGCGAAATCAAGAAAGAACCTATGTCTCCTCAGTTGAATACAGATGtaaaacaAGAAGGTTCGGACAGTCAAGGGTCATTGACCTATAAAGTAAAATCGGAAACTTTTGATACCCAGTATGAATTTGTAGATAGTAATGATCATACAGACATCAAAAAAGAGGGATTTCTAAATGAAGAACTGCAAATAAAAGATGAGATTGATGAGTCTCAACCAATCGAAAAGTTACCGCAAGTTAAAAGTTTCTCTTGCGATTTATGTGACACCAAATTTAGGACCAAGGATAGTTTACATCTACATTTGATTGTTGGAGTAAATCCACTTCAGTGCAAGATATGTGATTATAAAAGCACACAAAAATGTATGCTACAACAACACATGAAGACACATCCTGGCTTACTAGTAATAACTAGCATGGACCTAAATGAAGATGTAAAATGTACAGTTGCAGAAGAAATTTGGTTGCCAGACACCAACAATCCCATATGCAACTTTTGGGATCCGAACGAAATCAAGAAAGAATTTGCGTCGGCTAACTTGGATACACACAtaaaacaAGAAGATCTCGATGTTGAAGGGTCGTTgaactttcaaataaaatcggAAGTCTCGGATACTGGATATGAATTTCTTGATGATAACCATATTAAGGTGGAACcgttacaaataaataatgaaatagaTCAACCTGATCTAATAGAAAATATTCCtcaaattgaatttttctattgtTATTTATGTGACGGTAAATTCACGTCCCATGATGTTTTACAGCAGCATTTGGTCAGTGAATTAAATCCACTTCAATGCAAGAAATGTGATTATAAGTGCACACAAATATGTTTGTTAAAGCAACATGTCAAGGTACATATTGTAGAAAAGCGTTTTAAATGCAACGTTTGCGATGATACTTTCACGCAGAAGAGTTCTCTACAACATCACTCGATGAGACACACAGgtgagaaaccttttaaatgtaacataTGTGAATATAAAAGTATACAAAAAAGGAATTTAATAAGACATATGCTAATACACAGCAATGAAAAGCTTCTCAAGTGCGATTTATGCgattataaatttaaacgtACATCTGCTCTACaaaaacatttattggtacATGCCGGTGAAAAACCTTTGAAATGCAGTTTATGTGTTTATAGATGTGTAACCAAAGGTCATTTAACACGACACATGCGAACTCATACAGGCGAGAAACCTTACAAATGTCAAGAATGTGAACGTAGATTTACGGATACATCAGCCTTAAGAAAACATTTGATGGTGCACGCAGGTGAAAAGCCCTTTAAATGTGATGTATGCGATTATAGATGTGTAGACAAAAGTCATTTGACACGACATATAAAAATTCATACAGGAGAGAAACCGTTCCAATGTACtttatgtgattatagatgttcgtTTAAACCCAATTTAGACAGTCATATGAGGACTCACACTGGAGAAAAACCTTATAAGTGCAACGTATGTGATTACCGAGGAACACATAAAAGTCACTTAACACGACACATGGAAACCCATACTAAAGAAACCGGTTTAAGGTGCGAAGTATGTGattgtaaatttaaacaaatgtcTGCCTTACAAAAACATATGACGACACATGGaggtgaaaagcctttcaaatgtgatctatgtgaatatagatgtaTCGATAAAAGCCATTTAACAAGACATATGAGAACccatacaggagaaaaaccgTTCAAGTGCAATGTTTGTGAACGTAGATTTAGAGATCCTTCTGTTTTACGAAAACATCACATGCTgcatactggggaaaagccttttaaatgtaaaatatgtgattatagatgcaTTCGTAAAAGTCATTTAACCAGACATACGAGGACTCATACTGGAGAAAAACCCTTTAATTGTGATGAATGTGATTATAGGTGTATTCAGAAAGATCAGTTACGATCGCATATGAGAACTCATACCGTACTactataa
Protein Sequence
MDVSGDVKCTVVEEIWLPETQDNTDEVWHRSEIKKEPMSPQLNTDVKQEGSDSQGSLTYKVKSETFDTQYEFVDSNDHTDIKKEGFLNEELQIKDEIDESQPIEKLPQVKSFSCDLCDTKFRTKDSLHLHLIVGVNPLQCKICDYKSTQKCMLQQHMKTHPGLLVITSMDLNEDVKCTVAEEIWLPDTNNPICNFWDPNEIKKEFASANLDTHIKQEDLDVEGSLNFQIKSEVSDTGYEFLDDNHIKVEPLQINNEIDQPDLIENIPQIEFFYCYLCDGKFTSHDVLQQHLVSELNPLQCKKCDYKCTQICLLKQHVKVHIVEKRFKCNVCDDTFTQKSSLQHHSMRHTGEKPFKCNICEYKSIQKRNLIRHMLIHSNEKLLKCDLCDYKFKRTSALQKHLLVHAGEKPLKCSLCVYRCVTKGHLTRHMRTHTGEKPYKCQECERRFTDTSALRKHLMVHAGEKPFKCDVCDYRCVDKSHLTRHIKIHTGEKPFQCTLCDYRCSFKPNLDSHMRTHTGEKPYKCNVCDYRGTHKSHLTRHMETHTKETGLRCEVCDCKFKQMSALQKHMTTHGGEKPFKCDLCEYRCIDKSHLTRHMRTHTGEKPFKCNVCERRFRDPSVLRKHHMLHTGEKPFKCKICDYRCIRKSHLTRHTRTHTGEKPFNCDECDYRCIQKDQLRSHMRTHTVLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-