Hnig020369.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
-
Assembly
GCA_963082805.1
Location
OY720163.1:2614959-2621287[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 7.2e-06 0.00072 21.0 1.7 3 23 66 86 64 86 0.97
2 26 0.0054 0.54 11.9 3.6 1 23 92 114 92 114 0.99
3 26 1 1e+02 4.8 5.4 1 23 120 142 120 147 0.75
4 26 0.00022 0.022 16.3 2.8 2 23 154 175 153 175 0.98
5 26 0.005 0.5 12.0 0.6 1 23 185 207 185 207 0.99
6 26 0.51 51 5.7 0.2 1 23 214 236 214 236 0.97
7 26 4.9e-05 0.0049 18.4 1.8 1 23 242 264 242 264 0.99
8 26 7.6e-06 0.00075 20.9 2.7 1 23 270 292 270 292 0.99
9 26 0.57 57 5.6 0.0 9 23 307 321 299 321 0.90
10 26 3.2e-05 0.0032 19.0 2.0 2 23 338 359 337 359 0.97
11 26 0.00071 0.071 14.7 4.0 1 23 365 387 365 387 0.99
12 26 0.89 89 5.0 1.6 10 23 688 701 687 701 0.97
13 26 0.00045 0.045 15.3 2.2 1 23 707 729 707 729 0.97
14 26 4e-06 0.0004 21.8 0.9 1 23 735 757 735 757 0.99
15 26 0.002 0.2 13.3 0.6 1 23 867 889 867 889 0.98
16 26 0.0067 0.67 11.6 3.3 1 23 895 917 895 917 0.98
17 26 0.001 0.1 14.2 2.9 1 23 923 945 923 945 0.99
18 26 1.2e-05 0.0012 20.3 1.8 1 23 951 973 951 973 0.99
19 26 0.0014 0.14 13.8 2.1 1 23 979 1001 979 1001 0.99
20 26 0.024 2.3 9.9 7.9 1 23 1007 1029 1007 1029 0.97
21 26 0.014 1.4 10.6 0.7 1 23 1035 1057 1035 1057 0.98
22 26 2.4e-05 0.0024 19.3 3.5 1 23 1063 1085 1063 1085 0.98
23 26 0.0002 0.02 16.5 0.9 1 23 1091 1113 1091 1113 0.98
24 26 1.6e-05 0.0015 19.9 1.8 1 23 1119 1141 1119 1141 0.99
25 26 0.45 45 5.9 1.3 1 23 1147 1169 1147 1169 0.93
26 26 0.0089 0.89 11.3 1.1 1 23 1176 1199 1176 1199 0.94

Sequence Information

Coding Sequence
ATGGAAAAAGGAACAATACTTGAAACGCTGTTAGTTGGCACCGCTAAGAAGCCGTCCGATGTCCCTACAGTTAATGACGGCAGTAATGATGTCCCAGTTTCACAAGAAATTGAGGAAGTATTGAtaaAAATGAACGATAGCGATGATCAATGTTGGTCGGAACATTCTTATACACATACACCTGACCCTATTAACTGCACTATATGTGATTATAAATTTACACGGAAGAGTGATTTCCTGCAGCATTTGAAAACTCACACGAGCGAAAACCCATTTAAGTGTGActtatgtgattatagatgcaTACGGAACAGTATTTTcgaacaacatatgaaaactcaCATGGGAGAAGGACCATTTAAGTGCACCAAATGTGATTTTGGGTGTAGGCAGAGAATTATATTTCAAAGACATTTAAAAGGTCACATGAGGGAAAAACATACGAGGGTAAGACCAGTTAAATGTAACGTTTGTGATTATAAAACCATAAGAATGAGAAATTTACAGCACCATATGAGAAGTCATATGAAAAGTCATGCAGAAGAAAAGATTTATAAATGTAGCCGTTGTGATTATACGTCTGTACAAGAGATAAATGTACGAGAGCATATAAAAAGTCATATCCTAGGAAAGAAGACTTTTAAATGTGGCCTGTGTGATTATACGTCTATACTAGAAATAAGCGTACAAGAACATTTAAAAAGTCATGCCGCAGATAAGAGCTTTAAATGTAACGTTTGTGATTATAAGACATCACGATATATAAATTTAGAACAGCATCTGAAAACGCATACCgaagaaaaaccatttaaatgtacGCTTTGTGATTATAAATATTCACAGgaacgtaatttaaaattacatatgAGGTCTCACACCACAGAAGACCCTTTGAAATGTGACAATATTGGAGAAGAGCCATATTCACAGGAacgttatttaaaattacacatGAGGTCTCACACCCCAGAAGACCCTTTGAAATGTGACAATACTGGAGAAGAGCCTTTGAAATGTAACATTTGTGATTTTAAGTGTCCAGAGAACGATAATTTAGAACGACATATGAAGactcatataaatttaaaactgtttaaatGCAAGATATGTGGTTATACGTGTATGGAGAGGATGAAACTACAACGACACATAAAATCTCACAAGGGGAAAAGATCTTTTAAACATAACGTTTCTGATTACAAGTCCAAAAGAAAGATAAACTTACAACAGATGGAAAGACttactggtgaaaagcctttgaaaTGTAATGATCGGATTATGGATCAACAGACTCTTTTACCACCTAAAAAACGTCCTGCAAAACACTTTTCAGTTGAAGACAAAGAAAAAGTCCTAAATGTCTTTAATGCTTACGACGAAAAGTACCCGAATAGTGCCAAGACCCAAAACGTTGAATTGACAGCACAAGCCgtagGTGTGAGTGTCGcaagtgtttttaaaattcttcgAGAATATAAAGAAACACAACAACTTCATCCTCCAAAAGAATACCGTCGACGTCGAGCAATTCTAGACAAGGTTGATGACGAAACTAAAAATGCACTTAGAAGCATAATTCATTCTTTTCTTGAAAGAAATGATCCACCAAGTTTGGATAAAGTCCTTTCAGTGAtgaatgcaaataaaaatttaccgCAATTTAAACGGAGCACTTTAAGAACGTTGATAAAAGAAATCGGGTTTGAGTTCACAAAACAGTCACGGAAGATAATTCGgagtaaagaaataaaatttgaaacttGCTTCGTTCCTGTCAGAGAAGACTTCACGGCCAATTTTTGTGGTCTAAGCGAACTTAAACACGAAATTTCAGATTCTGAATCAAATTCGTGTGAAATCGAACAACCTGCTCTTGtgaAAACCGAAGAAGACACCGGGGATCCGTTTTGGGGGCTACAAATAAAATCTGAAGCTCTTAATTTAAATACAGAGAATGAAGCAAATGATGGTGATAACAAAATCAAGCCTGAGCCTCTTCCGATTGAAGAATTAGATATTAAGGATAATGTTAAGCACGATTCGTTAGAAAACCCGGTTTTATTTACAAGAGAATCTGCTTTGCACATGCACATGAAAACTCATAATGGTGAGAAGCCTTTTCAGTGCATTATCTGTGAATACAAATGTGTACGGAATGATACTTTGCAGCGACATATGAGGATCCATAcaggggaaaaaccttttaaatgtggcGTTTGTGAATATAGATTCAGGCAAAAAGGAACTTTACAGATACACATGAAAATTCACACTGATaaaatggaatttaatttaaaagaagatTTAATAACTGAAACGATTCCTCTTGAGGAAGACGGTACCAACTTCTACAAAGAGGAAAATAGCACGGatgaaaatatttctgaagAAGATGAAAATAACAGGGAAATAGAAGAAGAGTATGAAGACAATAATATCAACCATAAATGGGAGAAGATTAATTATAATTGTAAAACGGAACTGGAATATGAAGGAGAAGAAATCAAAATCGCTTTTGATAATTCCAACGCAACTGTAGATGAAAGAAGTGCTACTGTCGCAAGAGAGTTAAGCAACTTATTAGAAGATGACAGTCCATACAAATGCACTTTATGTAGTTATAGTGCAAATAGAGAGAACAGTTTATTGGTACACATGCGGGACCATCTCCATCAAAACCTCTACCAATGCAACGATTGTGAGTACCATACAAAAAACAAAGCTGTCTTTAAAAAACACTTGGTCACACATACGGGAATGAAACCATACGAATGCCATGTCTGTACTTTTACCACAGCCCACAACGATAGCTTAGTTGTGCACTTGCGAaaacacactggggaaaagccttttcaatgtAAAGAATGTAATTATAAGACCGGAAACAAAGGAAACTTACGCACCCATATGATGACGCATACTAAAAAAAgaccttttaaatgtaaattatgtgAGTTTGCCACAACACGCAGGGATCGTTTACTTATGCACATGAGACGCCACACGGGGGACAAACCGTTCTGTTGCGAACAATGCCATTATACTTCGGCTAGTAATCAGAATTTACGCAAACACATGTTGCATCACAAAGtggataaatgttttaaatgcgAAATATGTTTATATAGCACGCAACaaagaacaagttttataaTTCACATGAACGGACACAGTGGGAAAGAGCCTCACAAATGCACCGAATGTGATTACACAGCTGTGAATAAATCTTCCTTAACTAAACATATGAAAAAGCATTCAAATGAAAGGCCTTTTGAATGCGAACAATGTGAATTCAGTGCGATTAGAAAATACGACCTAACACGGCATCTAAAAACGCACACCGaggaaaaattatataaatgtaaCGATTgtgattttaaaactaaacggAAGCTTAGTTTGGTGGCGCATATGAGAACCCATAGTGGGGACGAACCCTTCGAATGTATTCATTGCAAATACCAAACCAAAAATAGTGCTGATTTGGTAAAGCACTCTGAAATTCATGCGGCAGTCGATAAACCATTTTTATGCAAGTTATGCGGGTATAGTTCGACTAATAAGCTTAATGTCAATTCGCATATTAAGAATACACATTCCGATGAGATTAAGAAGAGATTAATGGAGAGAAAGGGTTCGtga
Protein Sequence
MEKGTILETLLVGTAKKPSDVPTVNDGSNDVPVSQEIEEVLIKMNDSDDQCWSEHSYTHTPDPINCTICDYKFTRKSDFLQHLKTHTSENPFKCDLCDYRCIRNSIFEQHMKTHMGEGPFKCTKCDFGCRQRIIFQRHLKGHMREKHTRVRPVKCNVCDYKTIRMRNLQHHMRSHMKSHAEEKIYKCSRCDYTSVQEINVREHIKSHILGKKTFKCGLCDYTSILEISVQEHLKSHAADKSFKCNVCDYKTSRYINLEQHLKTHTEEKPFKCTLCDYKYSQERNLKLHMRSHTTEDPLKCDNIGEEPYSQERYLKLHMRSHTPEDPLKCDNTGEEPLKCNICDFKCPENDNLERHMKTHINLKLFKCKICGYTCMERMKLQRHIKSHKGKRSFKHNVSDYKSKRKINLQQMERLTGEKPLKCNDRIMDQQTLLPPKKRPAKHFSVEDKEKVLNVFNAYDEKYPNSAKTQNVELTAQAVGVSVASVFKILREYKETQQLHPPKEYRRRRAILDKVDDETKNALRSIIHSFLERNDPPSLDKVLSVMNANKNLPQFKRSTLRTLIKEIGFEFTKQSRKIIRSKEIKFETCFVPVREDFTANFCGLSELKHEISDSESNSCEIEQPALVKTEEDTGDPFWGLQIKSEALNLNTENEANDGDNKIKPEPLPIEELDIKDNVKHDSLENPVLFTRESALHMHMKTHNGEKPFQCIICEYKCVRNDTLQRHMRIHTGEKPFKCGVCEYRFRQKGTLQIHMKIHTDKMEFNLKEDLITETIPLEEDGTNFYKEENSTDENISEEDENNREIEEEYEDNNINHKWEKINYNCKTELEYEGEEIKIAFDNSNATVDERSATVARELSNLLEDDSPYKCTLCSYSANRENSLLVHMRDHLHQNLYQCNDCEYHTKNKAVFKKHLVTHTGMKPYECHVCTFTTAHNDSLVVHLRKHTGEKPFQCKECNYKTGNKGNLRTHMMTHTKKRPFKCKLCEFATTRRDRLLMHMRRHTGDKPFCCEQCHYTSASNQNLRKHMLHHKVDKCFKCEICLYSTQQRTSFIIHMNGHSGKEPHKCTECDYTAVNKSSLTKHMKKHSNERPFECEQCEFSAIRKYDLTRHLKTHTEEKLYKCNDCDFKTKRKLSLVAHMRTHSGDEPFECIHCKYQTKNSADLVKHSEIHAAVDKPFLCKLCGYSSTNKLNVNSHIKNTHSDEIKKRLMERKGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-