Hnig019385.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- -
- Assembly
- GCA_963082805.1
- Location
- OY720162.1:27237074-27253695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.0032 0.32 12.7 0.3 1 23 144 167 144 167 0.97 2 30 0.0047 0.47 12.1 4.1 1 23 173 195 173 195 0.98 3 30 7.6e-05 0.0076 17.8 0.4 1 23 201 223 201 223 0.97 4 30 0.017 1.7 10.4 1.3 2 23 229 250 228 250 0.94 5 30 5.5e-06 0.00055 21.3 3.2 1 23 256 279 256 279 0.97 6 30 0.0007 0.07 14.7 0.8 1 23 283 305 283 305 0.98 7 30 0.00084 0.084 14.5 4.2 1 23 314 336 314 336 0.98 8 30 0.0003 0.03 15.9 0.1 1 23 344 366 344 366 0.95 9 30 0.0012 0.12 14.0 5.3 1 23 372 394 372 394 0.98 10 30 5.9e-06 0.00059 21.3 2.4 1 23 400 422 400 422 0.98 11 30 8.3 8.3e+02 1.9 0.1 1 10 428 437 428 441 0.87 12 30 0.0031 0.31 12.7 0.4 1 23 553 576 553 576 0.96 13 30 0.0012 0.12 14.0 1.0 2 23 583 604 582 604 0.97 14 30 4e-05 0.004 18.6 0.6 1 23 610 632 610 632 0.98 15 30 2.5e-05 0.0025 19.3 1.4 1 23 638 660 638 660 0.98 16 30 0.00012 0.012 17.2 1.0 1 23 666 689 666 689 0.94 17 30 0.0015 0.15 13.7 2.4 1 23 693 715 693 715 0.97 18 30 4.9e-05 0.0049 18.4 2.6 1 23 724 746 724 746 0.98 19 30 0.011 1.1 11.0 0.5 1 23 752 773 752 773 0.94 20 30 3e-05 0.003 19.1 1.0 1 23 779 801 779 801 0.98 21 30 4.8e-05 0.0048 18.4 3.2 1 23 807 829 807 829 0.97 22 30 0.58 58 5.6 0.9 1 23 835 858 835 858 0.91 23 30 0.059 5.8 8.7 0.1 1 21 1000 1020 1000 1021 0.92 24 30 0.00072 0.072 14.7 1.3 3 23 1033 1053 1031 1053 0.97 25 30 7e-06 0.0007 21.0 0.1 1 23 1059 1082 1059 1082 0.97 26 30 0.02 2 10.2 0.8 1 23 1093 1116 1093 1116 0.98 27 30 0.0025 0.25 13.0 0.1 1 23 1122 1144 1122 1144 0.93 28 30 7.9e-06 0.00079 20.9 2.6 1 23 1150 1172 1150 1172 0.98 29 30 1.5e-05 0.0015 19.9 2.1 1 23 1178 1200 1178 1200 0.97 30 30 4.7e-05 0.0047 18.4 1.2 1 23 1206 1228 1206 1228 0.98
Sequence Information
- Coding Sequence
- ATGACACTGAAGATGGCTGGTGTTTTTAAAGTAGAGTTTATTGTTCTTTCTGAACAAATTCCGAATCATGAACCAGTGGAATCGCTCAACCATTTATCCATAACGATACAACAACCAGTACTGCTTCTCACTTTACCACAAACAACTAACAACATTGGTATTCCCAATAGCAATGTCTTAGCCAATCCGAATACGGCAATACGGTTCATTATAACCTCTCGATCAAGCATTATGGATGCAGTAAGTTTGAATACTGCTACTATGACAAAATCAATGTGTGGAGTACGTCAAATTAAAACCGAGCCAGATTTTGACATTGAAAGGAAACCTCAGTTGAAGAATGCAAGCTTAGGTCCTGCAATACATTCAGAAAAGCGTATAAAGAATGAATCACAACAACCACATctagaagaaattgaaaaacctGCATATATTTGTGATATTTGCAACAAAGGGCTTACTTCTCGAACAACTTACTTGGATCATTTGAGAAATATTCATCGAAAGGTAGAAAAATTTATATGccaattttgcaaaaaaaaattcgaaataaaaCGTTCCTATATGAGACATCTGCGTAGGCACAATGCGGAAAAACCCTACAGTTGCGAAATATGTTTAAAACCTTTCTCGGAAAAATACAACGTTAAGAAACACATGGTCATACATTCCTCTGAAAAGGTTAAATGCGAGTTTTGCGAAAAGACGTTTAAATCAGCAGCTGGTTATCACCTACATAAATTAGAGCACACAAATGTTCCAACTTACACCTGTAATATATGTAATAAATCTTTTGTACACAAAACCAAATTGAATCAACACATAAATTACATTCATACAAGAAAATTTGAATGTGACatatgcaaaattaattttcggaGTCAATACGCACGTACTGTTCATCAACGTGATCATAAACAAACCACACGCGCTAAAAACTTTGTTTGTACTCTATGTAAGAAAGGTTTCAACTTCCATAATCAGTTAAAAAAGCACTTGTTGTCTCATAATCCAGAAGACATTCAAAAATATCTATGTGATATATGTGGCAAAGCAGTAACGACTCTCGAATCTTTAAGAAGCCACAAATTGGTGCATGAGAATGTAAAACCGTTTGAATGTAAAACTTGCGGAAAATTTTTTAGATCAAAAAAAGGTTTAACTTGCCATTTACAGACACATACTGGCGAAAGAAAGCATGTTTGTACAATATGCCAACAGTCGTTTACACAGAGGACATCGTTGGTGATACATATGAGGAGACACACTGGAGAGAGACCTTATAAATGTGATTTATGCGAAAAGGCATTGAAGAAGATTGAGTACCGTCCATTGCCTCTTACTTTCCAACAACCAAATATAAATTGTGTTGCTGTATCGGACAACACGTTAGCAAATCCAAATATGAATATCATGGAAGCCCCTAGATCAAGTATTTTGGCTTTATCAACTGTAGATTCTGTAATTACCCTACCACTAGGTTTCGACGAAAACCTTAAATATAATAGTAACATTAAAAGTGAACATTGTGATAACTCAAGCAATATAAAATCGGAAGTGGTTACAGAAGTTGGATCAGTGATTAAATCAGAGGAAGAGAATATTGAGAGTAAATCAAAACTACAACCAATTCTAGAAGAAATATCCAAACCGCAATTCGTTTGCGATTACTGCGGAAAGgggtttcaaattaaaaatagttacatGGGCCACTTAAGAAATATACATTCAAAGAAAGAGGGACTTCCATGCACGTTCTGTGAAGAAGTGTTTGAAGAAAAACATCTGTATATCAAACATCTACGGACTCATAATGTGACAAAACCTTATACTTGCGAAATATGTTTCAAACCATTTACGAATAATTATCAAGTTAAAATGCATATGGTTGTACATTCAGCTGAAAGGGCGTATAAGTGTGATTTATGTGAAAAATCGTTCAAATCAGCTAGTGGTTTTAGAGTACACAAGTTACGCCATATGAAAGATCGTACCCACGCTTGCAAGCTTTGCGATAAATCATTTGTCTTTCAAAGTATGCTGAATGAACATGTTAATAACGTTCATAACAAAATATTTCGATGCGATACGTGCAATGAGAAATTTGAAACGCATATTGCTTTGAAGAGACATAACCGCGCTCATAAACAAAACATTCCAAACAAGAACTTTGTCTGCACGATATGTAAAAAAGCTTTTGAGCTACACAGCTATTTAAGGAAGCATTTGTTAACGCACAACCCAAGACAGAAATATTTGTGTGACATATGTGGAAAAGCACTAAGCAAGAGATCTTTGCAGAATCACAAAAGCATGCATGAGAATGCCAAACCATTTCAATGCAGCATATGTGAAAAAACATTCAGGACAAAAGGAAATATAATACTTCATTCACAAACACATACTGGTGAAAGAAATCATTCTTGTTCAATATGCAAAAAGAAATTTACTCAAAGGACGCCATTGGTCATCCACATGAGACGTCATACCGGCGAAAAACCTTATAAATGTGATTTATGTGAAAATGCCTTTGTTAGTCGAACTATATTGAATAATCATAAGACAAATAAACATAAACTAGCTCAGTTGGCTGTTGTTGTATTTCCAGCAGGAATAAAGGTAAAACGTGTAATCACAGAAGACGCAAGACATAAGAAGGCATCCCACAGAAACTTATCAAGTAGTTCTGTACCCGAACTGCAAACAACGGAATCTTTAAGTTTACATGATAAAACTGAAGATCTGttgcaaaaaatttcaaaacctgATGTTCGTATTGTAAAAATCAAACAATCGATAGAAAAACAATTTGATAACGATGATGATGTCGGAAGTGTAGAAACTGAATTCAATAAAGATGATGACTCCGATGAAGATTATATTCCCAAACAgcaatataaaaagaaaacgtCAAAGAAAGATGCAGGAACAAAAGGGGTTGatgaaaaaaagaaatcaaaacagCAAGGAAGTGTGATCACTGTTAGAAGTACCTCTTACGTATGCATTATGTGTGGGGAAAGTTTTTCCTCTTTCGAAGTTCTATCTGATCATATGAAAAGTACAATTTCCTGTCGACAAGAACAGGTTGTGATATGTCCTATTTGCGAAAAAGGATTTAAGAATAGATCTCGTTGTAATGCTCATATGAACACACATAAGGAAAAACCCAAATTCCCTTGTACGAAGTGCGGAAAAGAATTTCCCAACAAAATTGCGTTACAGGCCCATTTAGAAACCATGCACACCCCGTACTTTGATGCAACCTTAGAAGCCTTTACCTGCAAAGTGTGTGATAAACAAGCACCGACAAAGCAGCGAATGTTGCAACATATCAATACCACCCATTTTCACATTTCCTCGTTTTTATGCGATATTTGTGGGAAAAGTTTTTGGAACGAGAATAGTTTAAGAGCACATAGTCTTATTCACACCGATTTAAAGCCGTACATGTGCCAAATATGCTCAAAATCGTTTAAGCTTTCAAGTTCACTTAGAGCACACATACATACCCATAATCAAGAACGCAGATTTGTATGTGACGAATGtggaaaaacttttaaaaagaaCGGTAGTCTTATTGAACATAAAAAACATCATGCTGGGGAATTTCCCTTTCAGTGTGATATTTGTGAAAAGAAATTTGTGTCCAAATCAGCTCAGAACACTCATCTGAAAAGTCATACTTATGCTTGTGATTCTAAGGATAATGATTAG
- Protein Sequence
- MTLKMAGVFKVEFIVLSEQIPNHEPVESLNHLSITIQQPVLLLTLPQTTNNIGIPNSNVLANPNTAIRFIITSRSSIMDAVSLNTATMTKSMCGVRQIKTEPDFDIERKPQLKNASLGPAIHSEKRIKNESQQPHLEEIEKPAYICDICNKGLTSRTTYLDHLRNIHRKVEKFICQFCKKKFEIKRSYMRHLRRHNAEKPYSCEICLKPFSEKYNVKKHMVIHSSEKVKCEFCEKTFKSAAGYHLHKLEHTNVPTYTCNICNKSFVHKTKLNQHINYIHTRKFECDICKINFRSQYARTVHQRDHKQTTRAKNFVCTLCKKGFNFHNQLKKHLLSHNPEDIQKYLCDICGKAVTTLESLRSHKLVHENVKPFECKTCGKFFRSKKGLTCHLQTHTGERKHVCTICQQSFTQRTSLVIHMRRHTGERPYKCDLCEKALKKIEYRPLPLTFQQPNINCVAVSDNTLANPNMNIMEAPRSSILALSTVDSVITLPLGFDENLKYNSNIKSEHCDNSSNIKSEVVTEVGSVIKSEEENIESKSKLQPILEEISKPQFVCDYCGKGFQIKNSYMGHLRNIHSKKEGLPCTFCEEVFEEKHLYIKHLRTHNVTKPYTCEICFKPFTNNYQVKMHMVVHSAERAYKCDLCEKSFKSASGFRVHKLRHMKDRTHACKLCDKSFVFQSMLNEHVNNVHNKIFRCDTCNEKFETHIALKRHNRAHKQNIPNKNFVCTICKKAFELHSYLRKHLLTHNPRQKYLCDICGKALSKRSLQNHKSMHENAKPFQCSICEKTFRTKGNIILHSQTHTGERNHSCSICKKKFTQRTPLVIHMRRHTGEKPYKCDLCENAFVSRTILNNHKTNKHKLAQLAVVVFPAGIKVKRVITEDARHKKASHRNLSSSSVPELQTTESLSLHDKTEDLLQKISKPDVRIVKIKQSIEKQFDNDDDVGSVETEFNKDDDSDEDYIPKQQYKKKTSKKDAGTKGVDEKKKSKQQGSVITVRSTSYVCIMCGESFSSFEVLSDHMKSTISCRQEQVVICPICEKGFKNRSRCNAHMNTHKEKPKFPCTKCGKEFPNKIALQAHLETMHTPYFDATLEAFTCKVCDKQAPTKQRMLQHINTTHFHISSFLCDICGKSFWNENSLRAHSLIHTDLKPYMCQICSKSFKLSSSLRAHIHTHNQERRFVCDECGKTFKKNGSLIEHKKHHAGEFPFQCDICEKKFVSKSAQNTHLKSHTYACDSKDND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -