Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.6e-05 0.091 13.9 1.1 13 41 98 123 91 126 0.87

2 7 0.0037 9.2 7.5 2.5 13 40 126 150 123 152 0.89

3 7 0.00095 2.4 9.4 0.9 1 39 143 177 143 185 0.90

4 7 1.3 3.3e+03 -0.7 0.2 18 27 187 196 171 205 0.76

5 7 0.0018 4.7 8.5 0.6 18 38 215 232 207 233 0.90

6 7 0.079 2e+02 3.2 0.1 19 39 244 261 242 264 0.89

7 7 6.8e-05 0.17 13.0 2.8 1 32 255 286 255 289 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.6e-05	0.091	13.9	1.1	13	41	98	123	91	126	0.87
2	7	0.0037	9.2	7.5	2.5	13	40	126	150	123	152	0.89
3	7	0.00095	2.4	9.4	0.9	1	39	143	177	143	185	0.90
4	7	1.3	3.3e+03	-0.7	0.2	18	27	187	196	171	205	0.76
5	7	0.0018	4.7	8.5	0.6	18	38	215	232	207	233	0.90
6	7	0.079	2e+02	3.2	0.1	19	39	244	261	242	264	0.89
7	7	6.8e-05	0.17	13.0	2.8	1	32	255	286	255	289	0.85

Coding Sequence: ATGTCGACTGATAGCGTTGAGGGCCTTTTTGAAACTCCTGAACAGGAATATTTCTCTTTTGGAAACTTAGACGATACTCTTATAGTTAATAGTCAGCCAATTTACAAAGATGATTTTCATAACAACCCCTCCGAAGACCCTTCTATTGAGTTAACAAACTCGACTGAAAAGTTTCCTAGTGATTCTTCAGTAGATGAATTTGTTAATGTAATAGACAATAATTCGTTAAATGATCACAACTATTCCAACACTGAAATGACTGCTGACTTACAGCTTTCATTACTAATGGAAAAAAATGCTAGTCATAAATGTGGATATTGTGACAAGTTCTTTTCCAATATTACTTCCTTGCGAAGGCATTTAAGGTCTCATACTAAGGAGCAACCTTTTAAATGCCAAGTTTGTGATAAATGTTTTTCTCAACAAAGCAATTTATGGAAACATATTAGAATCCATACAGgaGAACGTCCTTTTGAATGCCCACAGTGCAAAAGAAAGTTCTCACAAAGAGCAAATATGCAAAAACATATGTTAATTCATTCAGGAGAAAGACCATACGATTGTCCTTATTGTTGGAGAACATTTAGTCAATTAGCTAATCGCAACAAACATGTACAGCTACACttagGTACTAGACCTCATAAATGTCAATACTGTGACAAAACTTTTTCCCAACGCTCAAACATGCTTAAACATCAATATTTGCATGAAGGAGTAAAACCATTTCCTTGTGAAATCTGTCGTGTTTCCTTTACTCAACAAAGTAATCTAAAAAAACACTTGGCATTACATACTGATGAGAAATCTTTTATTTGTGAACATTGTGGGAAAAcatatatacaaaaaattaatttaactaaacaTAAACAACAATGTccaaaagaaatatttgaaacatttgAAAGTTTAGTagacacaaataaatattttactataaTTCAAGTAGATGgtacagaaaatatttattatgttaaTGAACGTAATGAGTttataaaatcagaaaaaaatgttgatacatCAGAAATAGAAGAGGGTAATTCAAATGAATCAAGTTCTTCCACAGGTGCCTAA
Protein Sequence: MSTDSVEGLFETPEQEYFSFGNLDDTLIVNSQPIYKDDFHNNPSEDPSIELTNSTEKFPSDSSVDEFVNVIDNNSLNDHNYSNTEMTADLQLSLLMEKNASHKCGYCDKFFSNITSLRRHLRSHTKEQPFKCQVCDKCFSQQSNLWKHIRIHTGERPFECPQCKRKFSQRANMQKHMLIHSGERPYDCPYCWRTFSQLANRNKHVQLHLGTRPHKCQYCDKTFSQRSNMLKHQYLHEGVKPFPCEICRVSFTQQSNLKKHLALHTDEKSFICEHCGKTYIQKINLTKHKQQCPKEIFETFESLVDTNKYFTIIQVDGTENIYYVNERNEFIKSEKNVDTSEIEEGNSNESSSSTGA

Sequence clustering based on sequence similarity using MMseqs2