Hnig011859.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- clz9
- Assembly
- GCA_963082805.1
- Location
- OY720161.1:28273552-28275306[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-08 3.2e-06 27.9 0.0 1 37 18 55 18 61 0.87
Sequence Information
- Coding Sequence
- ATGGGTCGGgtgtacaagaaaaaaatagggtgtaggaaatataaaaattactctGAGGAGCAGTTGACCAATGCAATCCGGGCTGTTAACTGCCGAGGGATGACTTACCAGCAAGCTGCAGACCGCTACAATGTTCCTaaaagaactgtttttaataaagtaaagGGGCTGCATAACGGTGCAGTTGGAGCTCCAATTACCATATCTGAAATCCAAGAGAGACATATTGTCGACGTAATGATAGCAACTGCTGAATTTGGTGCACCGCTTACCTCACTTGATCTTAGAATTGTTGTTAAAAGACATCTTGATAAATCTGGTGTTAGAATTCCAAAATTTCCCAACAACATGCCAGGTCAAGACTGggctttaaattttgttgatcgtCATAAGCATAGGCTTAGTCAAAGAAGTTGCAAAAACATCAAGCGGGTCAGAGCCGAAAAAACTGAAGTGGAAATAAGTCAATACTTTTCCaacttagaaataaatatagcagGTATTCCAAGTCAAAATATACTCAATTACGATGAAACTAATTTGACGGATGATCCGGGAGCAcgaaaatgtatttttagaaGAGGTACAAAATACCCTGAACGCGTTATGAATACAACTAAGTCTGCAATTTCTATTATGTTTGCCATTTCTGGGTCAGGAGAAGTATTGGCACCCTATGTAGTATATAAATCTGAACGTATATATGATCAGTGGACCATAGGTGGCCCAAAAAATGCAAGATATAACCGAACGCGGTCTGGTTGGTTTGACAGTCACTGTTTTGAAGACTGGTTTACCACCATGGTTTTACCATGGGCAAAGAATAAAAATGGATCAAAAATCATAATTGGTGATAATTTGTCCTCCCATTTAAGTGTTGATGTAGTCGTTGCCTGTCAACGcaataacataaaatttatttttcttccacCCAATTCAACACACTTGACCCAACCCTTAGATGTAGGATACTACGGACAAGTTAAAAGAATATGGAGAACAATTCTCACCaattataaaatgcaaaatCCCAGAGATAATGCCTTAAATAAAACGACCTTTCCTACTTTATTAAAACAGCTAGTTGAGAAGCTCAATATAAACGATTTAACTAATATAACGAGTGCATTCCGTGCAACGGGGATAATCCCTCTTGATAAAAATCAAGTGTTGAAGAAGCTGCCAAACCAGAGACTAGAGGAACAGAAGCAGAATGAAATTGATGGAACTCTCTTGgagtatttaaaagaaatcagAACCCCTTCGGAGacagtagaaaaaaaaagaaagaaaatggtGAGAGTTGTTCCAGGAAAATCGGTAGCTTATGAAGATCTTTTTCCTGAAGAGGAGGTCGCAGAGTCTCCAAACCCTGTAAATGAATTAGTACAAGACTTGAGTGGTAGTGATGATGAAGAAGACTTTGAAGAAGACATTGACACTAGTATTGATGCCAACGAAGAAGATGGATTAAATATAATTCAACCCAAAAAAGGAGATTATGTTGTAGTTGTTTTTCCaggaaaaaaaagaattaaacatTACATAGCACTGATACAAGATAAAGATGATGATGAATATACAATTAGCTGTTTGCGAAAAAAGAATACTGGTGGGCCATCTTATGTATATCCTCCAGAGGAAGACATCTGTTCCGTTAAAGAAGTAGATATTGTTAAGATACTGGAGACTCCCAAAATTGCCCGGGGCATACACACTATTAACTGCGACTTAAGTGCCTACAATAtgcaataa
- Protein Sequence
- MGRVYKKKIGCRKYKNYSEEQLTNAIRAVNCRGMTYQQAADRYNVPKRTVFNKVKGLHNGAVGAPITISEIQERHIVDVMIATAEFGAPLTSLDLRIVVKRHLDKSGVRIPKFPNNMPGQDWALNFVDRHKHRLSQRSCKNIKRVRAEKTEVEISQYFSNLEINIAGIPSQNILNYDETNLTDDPGARKCIFRRGTKYPERVMNTTKSAISIMFAISGSGEVLAPYVVYKSERIYDQWTIGGPKNARYNRTRSGWFDSHCFEDWFTTMVLPWAKNKNGSKIIIGDNLSSHLSVDVVVACQRNNIKFIFLPPNSTHLTQPLDVGYYGQVKRIWRTILTNYKMQNPRDNALNKTTFPTLLKQLVEKLNINDLTNITSAFRATGIIPLDKNQVLKKLPNQRLEEQKQNEIDGTLLEYLKEIRTPSETVEKKRKKMVRVVPGKSVAYEDLFPEEEVAESPNPVNELVQDLSGSDDEEDFEEDIDTSIDANEEDGLNIIQPKKGDYVVVVFPGKKRIKHYIALIQDKDDDEYTISCLRKKNTGGPSYVYPPEEDICSVKEVDIVKILETPKIARGIHTINCDLSAYNMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00788650;
- 90% Identity
- iTF_00788650;
- 80% Identity
- iTF_00788658; iTF_00788659; iTF_00788660; iTF_00788572;