Hnig022226.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- -
- Assembly
- GCA_963082805.1
- Location
- OY720163.1:27991630-27993322[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-09 3.8e-07 30.8 0.0 1 43 16 58 16 59 0.92
Sequence Information
- Coding Sequence
- ATGCCTACTgtgtataaaagaaaatgccAATCGCGGGGAAATTGGACTCAAGATCAACTAACTGCAGCTGTAAGGAACGTTATAGAACACACAATGTCGTTGAAAGCTGCCTCCCGGGAGTTTGGGATACCTCCAAGAACCTTAAAGAGACGCATAGCCAACAACAACACTGTAAAGGGAAGAATGGGACCTACGTCGATATTTGGTGTTGAGGCAGAGAAAAAGATTGTTTCACATGTCATCAAACTGCAAAAACATGGTTTCTCGCTTTCGAGGAGAGATGTGAGGGAAATGGCTTTCCACTTAGCTGAACAGCTACAGATTAGACACAAATTTGACAGAGAGAACCGTTTAGCGGGTTACGATTGGCTGAGTTCATTTTTACGAAGAAATCCAGAGCTCGCAATCAGAAAAGCTGAAGGGCTGTCAGAACATCGCAGTGAAGGAATGAACAGAGTATCTGTTCAACAATACTTCGAGCTACTTGAGAGGACCATGGAGGAACATGATTTATTTGATAAACCGTCACAAATTTTCAACATGGATGAAACAGGGATGCAATTGAATAACAAGCCTGGAAATGTAATTGCGCAAAGAGGTTCCAAATCTGTGACAACATTGACCGCTGGTGAGAAGGGCGAAACTATCACGGTGGTAGCATGCTGCAACGCCGAAGGAGTATTCCTTCCGCCGACATGCATCTTCAAGGggaagaatttgaaaaaagaatttttgGACCCAGGTTCCCAGGTGTACATGTCCCCTAAATCGGCCTACATCAATTCAGAGCTTTCCTTGAAGTGGCTGAAAGAACATTTCTATCCTAGAAAAGGTGTTGGAAAGACCTTATTGATTTTTGACGGACATGCCTCACACTGTAACAACGTGGAAACTTTGCAATTTGCAGACGATCATGATATAATTTTACTGTCTTTGCCACCTCACACCACCCATTACTTGCAGCCATTAGATCGTTCCGTCTTCAAGTCATTGAAATCTGCATACACGACTGCGTCAAATAACTGGATTAAAACTCACAGTGACAGAAAACTCTCCCGTTTGGCATTCAGATCTTTATTAAATCAACCATGGGGTAGAGCAGCAACAGTTCAAAATGCGCTTTCTGGATTTTCTGCAACAGGAATATACCCATATAATCCATTGGCCATACCGGATTATGCATTTATCGAGGATCTCGAGCCAGATAACCATCCAGATCCGCGTTCAATTGATGAGACTCCCACACCAACGGAGACAACAAATGGTTTCACACCAAGTAAAATACTTGACCATGTGGCGCCAGTTCCAGAAACTTTAATTGCTGTGAAGAGAAGAGGAAAAAGAGTAACCGAAATTTTGACTACTCCCGAAAATTTGGCTAAGCGGAAGAACATTAACGCTGTAAGAGAACAGAAACGGAACAAACAAAATCTACCACGTCCAGGTCCATCGACTACAGACTTGGAAAAACCAGGACCATCCAATAAAAAAGGCACAGCTTCCCGAAACTAG
- Protein Sequence
- MPTVYKRKCQSRGNWTQDQLTAAVRNVIEHTMSLKAASREFGIPPRTLKRRIANNNTVKGRMGPTSIFGVEAEKKIVSHVIKLQKHGFSLSRRDVREMAFHLAEQLQIRHKFDRENRLAGYDWLSSFLRRNPELAIRKAEGLSEHRSEGMNRVSVQQYFELLERTMEEHDLFDKPSQIFNMDETGMQLNNKPGNVIAQRGSKSVTTLTAGEKGETITVVACCNAEGVFLPPTCIFKGKNLKKEFLDPGSQVYMSPKSAYINSELSLKWLKEHFYPRKGVGKTLLIFDGHASHCNNVETLQFADDHDIILLSLPPHTTHYLQPLDRSVFKSLKSAYTTASNNWIKTHSDRKLSRLAFRSLLNQPWGRAATVQNALSGFSATGIYPYNPLAIPDYAFIEDLEPDNHPDPRSIDETPTPTETTNGFTPSKILDHVAPVPETLIAVKRRGKRVTEILTTPENLAKRKNINAVREQKRNKQNLPRPGPSTTDLEKPGPSNKKGTASRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00788603; iTF_00788597;
- 90% Identity
- -
- 80% Identity
- -