Hnig017954.2
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- -
- Assembly
- GCA_963082805.1
- Location
- OY720162.1:16988865-16994336[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-06 0.00028 21.6 0.0 2 38 19 55 18 60 0.94 2 2 0.00026 0.025 15.4 0.5 3 42 338 377 336 380 0.91
Sequence Information
- Coding Sequence
- ATGCCTCGGTCATACAAAACCAAAGCTGGGAgcagaaaatataaaacaattgacCAAGAAACTCTGGTGAAAGCGGCGaaagaaattatagaaaaaCGACTTACTTATCGTCAGACTGCAGATAAATATGATATAGCAAAAACTGTCCTCtacaaatttgtaaaattttataaacggAAACATTCTTGCGATGGGCTGAAAAACATTGGGGGGCAGCCTATTCTTTCGAAAGAAACGGAACAAATCATCACACAGCGTTTAATTTTATGTGGCGAGTGGGGTTACCCATTAGACACCTACGATCTACGGTGCATCGTCAAGAACTACTTAGAGAAGGCAGGTGTAGTCATaaggaaattcaaaaacaattttccgGGATTAGATTTTGCTAAAAGCTTTTTAAAACGACACCGGGTGGAGCTTGGAGAGAGATTATGTCAAAATATTAAGAGAAATAGGTCAGAGGTTTCTCATTTGACAATAAGTAACTATTTCGATGCATTAGAAGAGTCTCCACGTGATGTTCCTCCATCAAATGTCATCAATTATGATGAGACAAACCTCTCCGACGACCCTCGGAGGAAACGCGTGATTGTTCGCAGAGGTTGTAAATATCCAGAACGTGTAATGAACAGTTCAAAATCTTGCACATCAATAATATTTGCTGCTTCTGGAAGTGGGGAGTCAGAACCAACATCATCTTCAGACACCAGAATAGATGAAAATCcacttttaaaaaaagaatcacGAGGACAAGCtataaaagaaattgaagaaactGATCGAAACATGAAAAAATACCATAGTATTATAGAAGATCCAGGTTTATGGCCCGAGAAAGATCATGACTTTATCGAATATGTCACAAAAAGTACTACCTTCCAGGATTTAGATAccatagatttaaaaaaaaccaagaGGTGCTATAACAAACAGAATCGATATGCGTCGAAAGATATATTTTATACAACATTGATTAATGGAGAGACAGAAGAAGGCTCTTACACAGTAGAGGCCGTAAAAGCAGCGTGTGAGGCTGTTACTTCAAAACGGTTGACTTATCGTGCCGCTGCAGAAAAGTATAAAGTTAACAAAAGTGTTGTATATCAAAGACTTCGTGGCAGAAAGACGAGTGTGAACGTTATTGAAGGTGGCCAACATCCAGTGTTTACCGAAGATATCGAAATTGAACTGGAAAATTGCATATTAGCACGAGCAGAATGGGGATATCCTGTTGACAGAGAAGAGTTATTGGATCTGTCCAAGATTACGTCACAGCAAAAACGTGCAAAAACTGCTGATCCCTTCGTTGTAAATgatctttataaaaaattagagAACATAATTCGAAGAGAAGGTCTGCGTGAGTTGCCTGAACTCGTATTGAATTGTGATGAAAGCGGATTTGGTACAGATCTCAGCAAAGTTAAAGCAATTGGGAAAAGGGGGAGCCAGAGCTTTTATCGAAGAGTCGCTGGCACGGGacgagaaaatatttcagtaaacTATTGTGCAGCTGCATCTGGAGCTGTTTTACCGCCACATATAATCTATAAAGCGAAAGGTGGTGTGCAGGATGGACCAGTCCCGAAAATGAGTATCCCTGCACTATTTATTCTACCACAAAAAAATTGA
- Protein Sequence
- MPRSYKTKAGSRKYKTIDQETLVKAAKEIIEKRLTYRQTADKYDIAKTVLYKFVKFYKRKHSCDGLKNIGGQPILSKETEQIITQRLILCGEWGYPLDTYDLRCIVKNYLEKAGVVIRKFKNNFPGLDFAKSFLKRHRVELGERLCQNIKRNRSEVSHLTISNYFDALEESPRDVPPSNVINYDETNLSDDPRRKRVIVRRGCKYPERVMNSSKSCTSIIFAASGSGESEPTSSSDTRIDENPLLKKESRGQAIKEIEETDRNMKKYHSIIEDPGLWPEKDHDFIEYVTKSTTFQDLDTIDLKKTKRCYNKQNRYASKDIFYTTLINGETEEGSYTVEAVKAACEAVTSKRLTYRAAAEKYKVNKSVVYQRLRGRKTSVNVIEGGQHPVFTEDIEIELENCILARAEWGYPVDREELLDLSKITSQQKRAKTADPFVVNDLYKKLENIIRREGLRELPELVLNCDESGFGTDLSKVKAIGKRGSQSFYRRVAGTGRENISVNYCAAASGAVLPPHIIYKAKGGVQDGPVPKMSIPALFILPQKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -