Hnig014802.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hemicrepidius niger
Gene Symbol
PGBD4
Assembly
GCA_963082805.1
Location
OY720162.1:5040853-5046554[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.6e-13 3.5e-11 43.8 0.0 2 37 577 612 576 616 0.92

Sequence Information

Coding Sequence
ATGGCACTGGATACGGGAAATTGtgaaattcaagatggcgacgtTCTTGAAATTGACATAGAGCAGAAAGAAGATTGTGAAACGATCGATAGGAATGAACCAGGTCAAAACAACGAAGAGGACTATCATGAAGAAGTAAATGATGAAAAGGAACGCGAACAACTAGATTTAACTCCTTCGCTTGACGATCCAAAGTATATAGCTGAATTTCACAAAACAACTTTAGAAACATGTTCCACTGTATATGTTGCTGGTTATTTGGCATACAGCGTTGCAAGGAAGTATAATTGCGAGTTTTGTGcttcaaaattaacaaaaaacgaaaatgatcTGATTAATGAAAACGAGCTTTTTTTGTTGTGTAAAGATTATTCTAGCGAAGgcaacataaaatttttaaagagacCTGCAGATGAATTCGTGAATATCGTATTATATCTTTTAGAACAATTTAACACGGCTTTTGAAACATATAAATGTAGTGCGAACATCAAGAGCAATATAGAACAGCATTTACAAGGTTTATTAGAAAGACACTGCGAGTGGTTTCGATCAAATGAACCTGTATCGTGTCAAGTGCACAAAAGACATATTATAAGTTTGTTcatgaaaatgaaaacatttaGACATTTAAAGTGGGAATCAGAAAAATACGCAAAAACTATCAAAGAACCCTCAACCAAAGCCCCTAAGCCCCATAGAAAAAAGTTGCGAGTCTTTCCCCAATTCTTCAGTCAACGCTCAAAGTTATCAGCGTTTAGGTTATTTATCACAAAGGATATATTAGAAATTATTCTAAAAGAAACCAATAACGAAATGCGAACGGTATGCGAACTGAAAACCCAAAATTTCAAAGCCATTTCTGCCCAAGAAATAGATGCCTACATAGGACTACTTCTCCTGGCTGGAGTATTCAGATCAGCAGGAGAATCTCTAAGTGAATTATGGGACGAAAAAGACGGTCGACCAGTTTTTCGAGCTACTATGTCTCTAAAACGTTTTTATGTTATAAGCCGATTCCTAAGATTCGACGATAAAGAAAACAGGCCTAGCAGACGCCGTCATGATAAACTAGCAGCAATCAGATCAGTGTTCGATATGTGTGTGGAGCAGTAcccaaaaatgtttgtacccCATGAAGATGTAACTGTTGATGAACAATTGGTTCCATTTCGAGGAAAATGCCCTTTTAGGCAGTATATACCATCAAAACCGAGAGGAAAATATGGAATTAAATTATGGTTACTTTCTGATGTGAAAACGGCTTACGTTTATAATGCAGAGGTGGAGACCGGAAAGCCTGAAAATGAACCACGGGAAGTCAATCAAGGGAGAAACGTAGTTCTGCGTTTAGCGAAAAACTTGGAAAGCACTGGCAGAAATATTACGACTGATAACTTTTTTACTAGCTACACATTAGCAACTGAACTTTTGAGAACAAAGTTAACTTTAGTTGGCACgcttagaaaaaataaagcagAGATTCCTAAGGAATTTCTCCCAAACCGTAGCAAAGTTCCAAATTCTTCTATGTTTGGTTTCCAGCGCGATATAACCATTACGTCATACGTTCCAAAGAAGAACAAAGGTGTTATATTGCTTTCATCGATGCACcatgataataaaatttcagaagAAGAGCACAAGAAACCTGAGTGGCAAACTTGGGGCAGCAGGTCTAGAAGTTATAAATGTCGCCTAGGTGCTCGGAAATATAAGGATTTCCAGCCAGAAAACCTAGACTTAGCATTGAAAGCAGTAGCTGATGGAGAAATGTCAATTAGAGAAGCTGCTTGTGCCTATGGTGTACCAAAGTCGACAATACAACGAAAATATCATGGTCAAAGTCGAAACAACCCAGATagacccaaaattcttacgaaccTTGAGGAACAGCACCTTGTCGAAGGAATAATTGCAGCATCCAAGTGGGGTTTCCTTTTTTCTGATTTGGATGTTAGACTATTAGTTAAAGGATACTTGGACAGAGCCGGACGAATACAAAAACGTTTCCGTAATAATTTACCAGGCCAAGATTGGTGTAAATGTTTCTTAAAGCGCTATAAAAGCATATTATCAGTTCGCATGGCAGAAAACATAAAACGGTCGAGAGCACAAGTTTCAACTGAAACTATTACTCAATATTTTAATACCCTCGAGGAAGTATGCAGAGGCATCTCCCctgaaaatatcattaattttgATGAGACTAACATGACAGATGACCCCGGCCAACATAAAGTTATAGTAAAACGGGGTTCAAAGCATGCTGAGCGGGTTCTTGACACCAGCAAGAGTTCTACATCTGTTATGTTCGCTATAAGCGGATCTGGTGAGATGCTGCCACCATATGTAGTATTCAAAGCTATCCATTTATATGATTTATGGTGTATAGGGGGACCCGATGGTGTGTATACCGATCGAAAAATGGGTGGTTTGACAGCTTGA
Protein Sequence
MALDTGNCEIQDGDVLEIDIEQKEDCETIDRNEPGQNNEEDYHEEVNDEKEREQLDLTPSLDDPKYIAEFHKTTLETCSTVYVAGYLAYSVARKYNCEFCASKLTKNENDLINENELFLLCKDYSSEGNIKFLKRPADEFVNIVLYLLEQFNTAFETYKCSANIKSNIEQHLQGLLERHCEWFRSNEPVSCQVHKRHIISLFMKMKTFRHLKWESEKYAKTIKEPSTKAPKPHRKKLRVFPQFFSQRSKLSAFRLFITKDILEIILKETNNEMRTVCELKTQNFKAISAQEIDAYIGLLLLAGVFRSAGESLSELWDEKDGRPVFRATMSLKRFYVISRFLRFDDKENRPSRRRHDKLAAIRSVFDMCVEQYPKMFVPHEDVTVDEQLVPFRGKCPFRQYIPSKPRGKYGIKLWLLSDVKTAYVYNAEVETGKPENEPREVNQGRNVVLRLAKNLESTGRNITTDNFFTSYTLATELLRTKLTLVGTLRKNKAEIPKEFLPNRSKVPNSSMFGFQRDITITSYVPKKNKGVILLSSMHHDNKISEEEHKKPEWQTWGSRSRSYKCRLGARKYKDFQPENLDLALKAVADGEMSIREAACAYGVPKSTIQRKYHGQSRNNPDRPKILTNLEEQHLVEGIIAASKWGFLFSDLDVRLLVKGYLDRAGRIQKRFRNNLPGQDWCKCFLKRYKSILSVRMAENIKRSRAQVSTETITQYFNTLEEVCRGISPENIINFDETNMTDDPGQHKVIVKRGSKHAERVLDTSKSSTSVMFAISGSGEMLPPYVVFKAIHLYDLWCIGGPDGVYTDRKMGGLTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-