Basic Information

Insect: Hemicrepidius niger
Gene Symbol: bab2
Assembly: GCA_963082805.1
Location: OY720165.1:31678057-31685023[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.2e-11 8.9e-09 36.1 0.0 1 39 378 417 378 421 0.90

2 4 8.1e-12 7.9e-10 39.4 0.1 1 39 432 470 432 474 0.95

3 4 4.5e-16 4.3e-14 53.1 0.0 1 45 487 532 487 532 0.97

4 4 2.8e-15 2.8e-13 50.5 0.0 1 40 539 579 539 583 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.2e-11	8.9e-09	36.1	0.0	1	39	378	417	378	421	0.90
2	4	8.1e-12	7.9e-10	39.4	0.1	1	39	432	470	432	474	0.95
3	4	4.5e-16	4.3e-14	53.1	0.0	1	45	487	532	487	532	0.97
4	4	2.8e-15	2.8e-13	50.5	0.0	1	40	539	579	539	583	0.93

Sequence Information

Coding Sequence: atGTCGGGACAACATTACTGTTTGAGGTGGAACAATTACCAAAGCAATATGACCTCAGTCTTCCACCAGCTTCTTCAAAATGAAGCTTTCGTGGACGTCACATTAGCTTGTAAGGACTTATCCCTAAAAGCACACaagGTAGTGCTTTCTGCATGTTCCTCATATTTCCAAAAACTGTTACTGGAAAACCCATGCAAACATCCCACGATAATTATGCCGCAAGACGTGTGTTATGCTGATCTCAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCCCAAGCAGAGCTGCAGTCATTATTGAAAACAGCagatcaattaaaaataaaaggtctGTGTGAATCAGAAGAAAAAGATAATTCTGCGTCCTCTCTGTTTACACCAAAAGGTTATCCAAAGATCTGTAAGGTATCCTCGCCTAAACACTACAGAAAATTAGATAATAACAAGAGACATAAATTTAGAGAGTTTGATCAAGAAGAAGATTTGTCAGATAGGGAAGGTGATATTAAGGATGATATAATACAGGGAAATACATCTGAGGATGATAGTGATGCACCGTTAGTTGTTGATGAGGGACCAAAGAGAAAAAAACTGACACAGGCTCAATCCAAACCGATTAACATGAGCAGTCATGGCCTTTTGGCTGGACAGgCTCTGTTCTCTCAGTTGTGTGATAATGATGACTTCCCACCGGAGCCTCCGGCTCCTACAGCAACCCCAGTTGGTCACGTTGATCTTCAAGATCATTCACCGACGCGCAATCTATTGCAATCATCGCATAGGACAGATTTATCAGATGTTCACATAAAATATGaggatataaaaaaagaaactaCCATCAAATTCGAGACATTAAGATCATACGATCATGACTCGATGATGGATATGGATGCAACTCATATGTCAGGACCTGATCATTCAATGGAAAGCCATGAAGACGCAGAGAGAGCAATGCATTCCATGATGGTTACGCCAGAATTAATGGGGATGATGCCGGGGGGTTCGGGAAGGCTAGTGGATTTTATAGATTCCTCAAACGGTGATAATGGTCAGTTAAAAAGTAACGGTCACTCAGACCATGTAACAAGTAGGGCGCATGGTGGGGGACCTAAAACTTGGACACAAGAAGACATGGAATTAGCTTTAGATGCCTTAAGAAACCATAACATGAGCCTTACAAAGGCTTCCGCGACGTATGGTATTCCATCCACCACATTGTGGCAAAGAGCACATAGATTAGGGATAGACACACCGAAAAAAGAAGGTCCTACCAAATCATGGACTGAAGAAAATCTAAATTCAGCTCTTGAAGCTTTAAGAACCGGAACAATATCCGCAAATAAAGCCAGTAAAGCATATGgtATACCTAGTAGTACATTGTATAAAATAGCTAGAAGGGAAGGAATTAAACTTGCGGCGCCGTTTAATGCAGCACCAACAACATGGTCGCCGGAAGATTTAGAAAAAGCGTTAGAATCTATTAGGTCTGGACAGTCATCAGTTCAAAAAGCATCTACAGAATTTGGTATTCCTACTGGAACATTATATGGAAGGTGTAAAAGGGAAGGAATTGAATTGTCACGGTCTAATCCTACTCCTTGGTCTGAGGACGCTATGGGGGAAGCTTTAGAAGCCGTTAGattAGGACATATGTCAATAAATCAAGCAGCAATTCATTATAATCTTCCGTATTCGTCTTTATATGGAAGATTTAAAAGAGGGATTAAATACGAATCAGAAACAATCGATTCCAATAATTCAGATAGTCAGTCACAAACGGATCCTCAAGTGCTCGTTATGGATTATCCCAATTCCCATCAACAGATTCAATATCAGCATCATTCGAATAGCTGA
Protein Sequence: MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESEEKDNSASSLFTPKGYPKICKVSSPKHYRKLDNNKRHKFREFDQEEDLSDREGDIKDDIIQGNTSEDDSDAPLVVDEGPKRKKLTQAQSKPINMSSHGLLAGQALFSQLCDNDDFPPEPPAPTATPVGHVDLQDHSPTRNLLQSSHRTDLSDVHIKYEDIKKETTIKFETLRSYDHDSMMDMDATHMSGPDHSMESHEDAERAMHSMMVTPELMGMMPGGSGRLVDFIDSSNGDNGQLKSNGHSDHVTSRAHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESETIDSNNSDSQSQTDPQVLVMDYPNSHQQIQYQHHSNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00003877;
90% Identity: iTF_01284853;
80% Identity: iTF_00789472;