Basic Information

Gene Symbol
nfxl1
Assembly
GCA_907164795.1
Location
OU015455.1:896976-899447[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2 2.7e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 21 0.01 1.4e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 21 3.1e-07 0.0041 17.7 15.9 3 19 186 202 185 202 0.95
4 21 3.6e-07 0.0048 17.4 15.0 3 19 239 255 236 255 0.92
5 21 0.81 1.1e+04 -2.9 0.6 6 10 280 284 279 284 0.86
6 21 4.3e-09 5.7e-05 23.6 11.0 1 19 290 308 290 308 0.98
7 21 5.9e-06 0.078 13.6 18.8 3 19 345 361 337 361 0.86
8 21 0.33 4.4e+03 -1.6 0.9 7 13 365 371 365 372 0.82
9 21 0.18 2.4e+03 -0.8 0.6 1 5 370 374 370 379 0.79
10 21 2 2.7e+04 -5.3 2.2 5 10 384 389 384 389 0.88
11 21 1.2e-06 0.015 15.8 16.0 1 18 395 412 395 413 0.97
12 21 8e-09 0.00011 22.7 16.9 1 19 422 440 422 440 0.99
13 21 0.025 3.3e+02 2.0 5.2 9 19 488 498 486 498 0.88
14 21 0.002 27 5.5 7.5 1 12 508 518 508 518 0.96
15 21 0.35 4.6e+03 -1.7 3.6 14 18 547 551 547 552 0.87
16 21 0.15 2e+03 -0.5 0.3 7 12 567 572 567 572 0.86
17 21 3e-06 0.04 14.5 4.1 1 11 588 598 588 599 0.97
18 21 0.71 9.5e+03 -2.7 1.5 15 18 613 616 612 617 0.82
19 21 4.4e-05 0.59 10.8 16.2 3 18 629 645 628 646 0.86
20 21 2 2.7e+04 -6.5 3.4 9 13 652 656 652 656 0.71
21 21 3.2e-06 0.043 14.4 13.0 1 16 687 701 687 706 0.92

Sequence Information

Coding Sequence
ATGGCGAGAAGATACAGAGATGCGGCGGCAAAACTGCAGCAAAATGTCCAAAAACATTTGCAGGATATGAAAGAACTTTCATCGTCTGAAGATGATGAACCTTTCGAATCAAGCCTGCTGGAAGGAGTTTTGCAGCGTTACTGTTCCGGTGGGGGCGACTCTCATTTGCTTAACAGAACTAAGAATGTTTTAGAAGAAGCTATTAGCGGGCGCTCGATAACATGCCTCATTTGTATCGGATCTATCAAAAGAGCCGACGCAATCTGGAGCTGCGGCCATTGTTATTGCCATTTCCACCTATCTTGCATCCAAAAATGGTCAAATGATAGCATAAGCCTTCGCACCGAAGTCAACCAAGGCCCTGTGTCATTATTTGTGCCTAAAAAAGTAGAATGGTGCTGTCCGAAATGCCGACATTCATATTCTAAAGAAGAAATACCGCGCAAATACAGATGTTTTTGCGAGAAAACCGATGATCCACCATACCACCCTTGGTTGTTGCCTCATACGTGTGGTGAAGTATGCGGCAAGAGGTTGTCAACTGGGGAGAGTTGTAAACACAAGTGCTTGCTTCTTTGTCACCCTGGGCCTTGCCCCCCGTGCCCTCAGACTGTCAATGGAACTTGTTTCTGTGAAAAGGAACGCAAGAAAGTCAGGTGCAGCGCAGCTAAATGGTCTTGTGGTCAGTCTTGCAAAAGGCTGTTACCTTGTAGAACTCATAAGTGTGAGAATGAATGTCATGAAGGTGAATGTCCTCCATGCAGCTACACAAGTACACAACTTTGTCAATGTGGCAGTGAAAAGGCTAAGCGCCCATGCAATGATCCAACATGGTACTGCAAAAAGCCATGCAACAAAAAGTTTTCCTGTGGCTTCCATAAATGTGAGAAAATTTGTCATTCTGGTGCCTGTGGAGATTGTCCTAATTCAGGCTTGAATTCTTGTCCTTGTGGAGCTAATAAGAGATATGTACAGTGTCCTGATGTTATGGAAACATGCATGGGCACATGTGGTAAAGTTCATGAAGATTGTGAGCATGCTTGCCCTGAAAAATGTCATAGAGGACCTTGTCCCCCATGTCAAGTTCTTGTACAGAAAAAATGTCATTGCGGCACACATACCAGATCCTTGCCATGTAGTAAAGAGTTCAAATGTGAGACAAAATGCAGAGGTACCAGACCTTGTGGTAAACACAGCTGTGCCAGAAAGTGCTGCAATGGCAATTGTCCAACATGCGAAAAGATTTGTGATAAGCCCCTTCAATGTGGCCGACATAAATGTACCAACATTTGCCACCATGGCCCTTGTTATCCATGTCCCAGAGAATCTAAAATTACCTGCCGGTGCAAAGAGACATACATTACAGTACCGTGTGGTAGGGAAAAGTTTGCAAAACCCCCAAGGTGCACTCTTCCTTGTAAGATTAAATATAAATGTGGGCATTCAGAACAAAATAAACATTCATGTCACTTCAATGACTGCCCACCATGCAAAGCTATATGCCAAAAAACATATCCTAAATGTGGGCATGACTGTAAAGCAACATGTCATGAATATGTTGCGGTGGTTTTCAAACAGGTGGAGAAACCTGCTACACCTTGGGAAGTCCAACCACCAAAGACTAAAATCATGACATTAGACTGCCCCCCATGTGACACTCCTGTGTCAGTTGTATGTTTAGGGGAACATGAAACTGAAGAACAACTTTGCCATTCAGCAACACGACGATCCTGTGGAAGAGAATGCGGCCGTCCATTGCCCTGCGGCAACCATACATGTGCTTTATTGTGTCATCTTATAACTCAAGAGGAAAAACATCCTAATGTGCCTTTAAGTTGTAAACCCTGTGAGAAAGAATGCTTGGTCCCAAGACCTGAAAAATGCATTCACAAATGCCCTAAACAAGCCTGTCATCCAGGGCCATGCCCTCCATGTGATATAATTGAAAGAACACCCTGTCACTGTGGTGTTACTGAGCTATATCTACGATGCAGAGAGCTATCAAAAGCAACAGAAGCAATGTTGTCTTGCAAGCAACAATGCTCGAAAAATCTAGAGTGTGGTCACCGGTGTCGTAACACATGCCATTCTGGTCCATGTGGAAACCAGCTTTGCACCAGAAAAACGAAAATACACTGTCCATGTTCAAATTTAAAGAAGGAAGCACCCTGTAATCTTGTAAGAAATGGAGAATTTAAAGTAGCTTGTGACAAATCGTGTGAAGAAAAGAAACTTGCAGCTCAATTAGAAAGAGAAAAAGAGGAACAAAGACAGAAGGAGTTAGAAGAAGAGAGAAATAAAAAGGAGTTAGCTGAATATGAATGGAAACTGAGTGGCAAAAAGAAGAAATATAAGGAAAAGAAAGTTGTTGTCAACAAGACTGATAAGAATTGGTTTCAACATTACTTGGTTCCTATTATGTCTGTATTAATTTTAATTGGTGCAGCTTCATATTACATACTATATGTATAA
Protein Sequence
MARRYRDAAAKLQQNVQKHLQDMKELSSSEDDEPFESSLLEGVLQRYCSGGGDSHLLNRTKNVLEEAISGRSITCLICIGSIKRADAIWSCGHCYCHFHLSCIQKWSNDSISLRTEVNQGPVSLFVPKKVEWCCPKCRHSYSKEEIPRKYRCFCEKTDDPPYHPWLLPHTCGEVCGKRLSTGESCKHKCLLLCHPGPCPPCPQTVNGTCFCEKERKKVRCSAAKWSCGQSCKRLLPCRTHKCENECHEGECPPCSYTSTQLCQCGSEKAKRPCNDPTWYCKKPCNKKFSCGFHKCEKICHSGACGDCPNSGLNSCPCGANKRYVQCPDVMETCMGTCGKVHEDCEHACPEKCHRGPCPPCQVLVQKKCHCGTHTRSLPCSKEFKCETKCRGTRPCGKHSCARKCCNGNCPTCEKICDKPLQCGRHKCTNICHHGPCYPCPRESKITCRCKETYITVPCGREKFAKPPRCTLPCKIKYKCGHSEQNKHSCHFNDCPPCKAICQKTYPKCGHDCKATCHEYVAVVFKQVEKPATPWEVQPPKTKIMTLDCPPCDTPVSVVCLGEHETEEQLCHSATRRSCGRECGRPLPCGNHTCALLCHLITQEEKHPNVPLSCKPCEKECLVPRPEKCIHKCPKQACHPGPCPPCDIIERTPCHCGVTELYLRCRELSKATEAMLSCKQQCSKNLECGHRCRNTCHSGPCGNQLCTRKTKIHCPCSNLKKEAPCNLVRNGEFKVACDKSCEEKKLAAQLEREKEEQRQKELEEERNKKELAEYEWKLSGKKKKYKEKKVVVNKTDKNWFQHYLVPIMSVLILIGAASYYILYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00820620;
90% Identity
iTF_00291213;
80% Identity
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