Basic Information

Insect: Hemaris fuciformis
Gene Symbol: ush
Assembly: GCA_907164795.1
Location: OU015435.1:2318050-2320637[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0037 0.31 12.1 0.2 1 20 93 112 93 114 0.95

2 9 0.00038 0.032 15.2 1.0 1 23 152 174 152 174 0.98

3 9 0.062 5.2 8.3 0.3 3 20 205 222 204 224 0.93

4 9 0.018 1.5 10.0 3.9 2 21 458 477 457 478 0.95

5 9 0.0054 0.45 11.6 0.2 3 20 507 524 505 526 0.90

6 9 1.1 93 4.3 0.0 2 23 554 575 553 575 0.94

7 9 0.0078 0.65 11.1 1.3 1 23 581 603 581 603 0.99

8 9 0.27 22 6.3 1.0 1 23 642 665 642 665 0.96

9 9 0.17 14 6.9 0.7 2 20 697 715 697 717 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0037	0.31	12.1	0.2	1	20	93	112	93	114	0.95
2	9	0.00038	0.032	15.2	1.0	1	23	152	174	152	174	0.98
3	9	0.062	5.2	8.3	0.3	3	20	205	222	204	224	0.93
4	9	0.018	1.5	10.0	3.9	2	21	458	477	457	478	0.95
5	9	0.0054	0.45	11.6	0.2	3	20	507	524	505	526	0.90
6	9	1.1	93	4.3	0.0	2	23	554	575	553	575	0.94
7	9	0.0078	0.65	11.1	1.3	1	23	581	603	581	603	0.99
8	9	0.27	22	6.3	1.0	1	23	642	665	642	665	0.96
9	9	0.17	14	6.9	0.7	2	20	697	715	697	717	0.92

Sequence Information

Coding Sequence: ATGCCGGGAGAACCTCGCACGCCGAGCTCGGGGGGCGACCGACCCGCGTCCAGTGGCGGAGCATCTCCCGCGTCGGGGGGCTCGCCCGCCGCCTCGCCGCCCCGCCTGCGCCTCAACACGAGCCTCGCCACGGACCCGGCGCTGGCGCCCCAGGCGACGACGCTCAAACGTGAGCCGCCGTCGCCCTCACCACCGCCACCGCCGGCGCCGCAGCCTCGAGACTACATGGCGTTGACTGCAGCCGCCTTCCCTGGCATTTTTTCTGCAACACCGAGCTATGTATGCAAACCTTGTGGCATCAGATATTCATCGCTAAGCACACTGCAAGCGCATCAGGAGCATTATTGTTCCAATAGAAAGCCGAAACCGCCAGAGAACTCAGAAGCAGCGGCGGACGCAACTGTGGACGAATCGAGTGGCGACGCGAAAACTCCGAGACCCGCCGGCAAACAGTACGCTTGCACTTTTTGCTCATACAGTGCTGACAAGAAGGTCAGTTTAAATCGGCACATGCGGATGCACTCGTCGTCGCCTGTTAGTAGCGGCACGCCGGTGCCCACACCGACGTCCAACGGTGAAGCTACGGAGAGCCCACCGGCGCCCGACCGCTACTGCGCAGACTGCGACATACGCTTCAGTTCGATAAAAACGTACCGAGCGCATAAAGCTCATTACTGCAGCACACGACAGGTGGTCAAACAAGCTCTACAGGCTATAAGGTCCGGCTCAGCCACCTCCGGGTCGGCGCCGCCGTCACCTGGAGCCACGCCTCCAGCACAAAATCAGTATGCGTTAGCCTTGCCGACGAATCCCATACTGATCGTACCATACTCCTTACTGCGAAGCGCCAGTACTCTACCGGGCACGACCCTGCCCGATCCGGACACGCCGTGCTTCTTGTTGCCCAATGGTACGTTCCAACCTTTGAGTCAAGCTTTACCAAATATAAATGCAGAGGGGAAGGCAACGGAAGTCCTGAAGTCTGCAAATCGACCACGAGAGCCCTCACGAGATGGCGCAACTCCTTTAGATCTTAGCGTACGTCGTTCGCCTGAGTCAGTGACTACGGATGATCATGAGAAAGAGAACAGGATACGATCCGCCACTCCGGAGCAAATTGTTTGCGCACCGTCGCTGCCAGGGTCTCCTGGGACGCCATCTCCATCCCGGCGGTCATCGTCTCCGAGCGGCGAGAGCTCGCCGAAAAGACGGCGGCGCAACTCCAGAGGCCCAACGCCGAAGCCACCAAGCGTTCCCTCGCCACCAGTAGTGCCGCCTCCAATTATGCCTCCAGGCTTAGCCTTACGACTCGCTTCCGAGCTCCCGGTCACCGCCGCATCTCCCCAAGTGTTAGTCAAGCAGGGAGTATCCAAATGCAAAGAGTGCAATATCGTCTTCTGCAAGTATGAGAATTATCGTATACATAAAAGGCATTACTGCTCTGCCGGTAGTGGAGAGGAGAGGGCAAGTCCAGCTCCGCCTGAGCCGGGTCCTCCGCCACAATACCGTCAGCTTATCTGTCTCGCGTGCGGCATACACTTCAGCTCGCTGGATAACTTGACCACTCATCAATCTTACTACTGCACTAAAAGAGAGACTCGATCGCCGCGTAGCGTTCCGGAGGCTCCGAGACCGTCGTCCGGATCTGAAGGGGGGTGGAAGTGTCCGTGCTGTGATGTGGTGTCGCCGACTGCAGCCGCCGCCCAGCGCCACATGGAGGCGCACGCCGGCGTCAAGGCATTCCGCTGCACCATCTGCCGGTACAGGGGGAACACTCTCCGCGGCATGCGGACGCACATACGCATGCACTTCAACAACAAGAAACCAGCTGATTTACAGGAGGAAACCTACATAGCGTGCGTGCTCGAAGAGGACAGTCGAGAAGCCACCTCGCCCAGCCCCGTGGTCGCTGGGGAGCGCGTGCATCGCTGCAGCAGCTGCGCCTACACGTCCACGTACCGCGGTAATGTGGTGAGACACGCTCGTCTGGTCCACGCCACCGACGAGCCTGAAGAAGAACACACCTCCCCAGTCCCAGCCGTAGATATCAAGAAAGAACCAGACGTCGAAGTTGAGGAAACACCCAACTACTGCAAATCTTGTGACATATCATTCAAATACGTCAACACCTACAAGGCTCACAAGCAGTTCTACTGCACTGCGAATAACCAAGACGCTGCTGCCAATAACAATGTCCCAGCGCCGCCACCAAGAGTCAGCGACACCCCTGTACTATAA
Protein Sequence: MPGEPRTPSSGGDRPASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATTLKREPPSPSPPPPPAPQPRDYMALTAAAFPGIFSATPSYVCKPCGIRYSSLSTLQAHQEHYCSNRKPKPPENSEAAADATVDESSGDAKTPRPAGKQYACTFCSYSADKKVSLNRHMRMHSSSPVSSGTPVPTPTSNGEATESPPAPDRYCADCDIRFSSIKTYRAHKAHYCSTRQVVKQALQAIRSGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGTTLPDPDTPCFLLPNGTFQPLSQALPNINAEGKATEVLKSANRPREPSRDGATPLDLSVRRSPESVTTDDHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRRRRNSRGPTPKPPSVPSPPVVPPPIMPPGLALRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGSGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRSVPEAPRPSSGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEETYIACVLEEDSREATSPSPVVAGERVHRCSSCAYTSTYRGNVVRHARLVHATDEPEEEHTSPVPAVDIKKEPDVEVEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDAAANNNVPAPPPRVSDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00859956;
80% Identity: -