Hhel001630.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971414.1:27392433-27397077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.13 14 7.2 3.4 2 22 194 214 193 214 0.95 2 14 0.18 19 6.8 0.6 2 23 466 487 465 487 0.96 3 14 0.1 11 7.6 0.2 1 23 590 612 590 612 0.97 4 14 0.052 5.5 8.5 3.5 1 23 646 668 646 668 0.95 5 14 5.3e-05 0.0056 17.9 4.2 1 23 676 698 676 698 0.99 6 14 0.44 47 5.6 3.9 1 20 777 796 777 799 0.93 7 14 0.84 89 4.7 1.1 1 23 859 881 859 881 0.94 8 14 0.19 20 6.8 0.6 1 23 889 911 889 911 0.94 9 14 0.0045 0.47 11.9 0.6 1 23 976 998 976 998 0.94 10 14 0.011 1.2 10.6 0.3 1 23 1004 1026 1004 1026 0.96 11 14 0.0051 0.54 11.7 2.6 1 23 1116 1138 1116 1138 0.97 12 14 0.00013 0.014 16.7 1.4 1 23 1144 1166 1144 1166 0.99 13 14 3.2 3.4e+02 2.9 3.4 1 23 1257 1279 1257 1279 0.96 14 14 0.0034 0.36 12.2 2.1 2 23 1292 1313 1291 1313 0.98
Sequence Information
- Coding Sequence
- ATGGGTCTTCAGTACACACAACACGAAAGAGAAATGACTGGATGCCAAAGTGATTCTAATGAAGCTACAACCTCAGAAATGGTAAAGAAAGAAGATAGTGAACATTCACAACAATCTGTCGGATCTTCTAACAACGCTTACTTAGATGATAGTAGAAGTCAAAAAGATAGTAGAAAAGCTCCAAGACCAATCCCTCAACTTATACCCTTAACAACATCAACTCCGAATCAAAAACCACCATCTGGTGAGCCACCAGCCAAAAAGTTTAAAGAAAGCTCTACGCCAGAATCTACAGACTTAAATGTGAGCAAAAAACAGGATCACTTGCCAAGTGATACCACTTCAACGCCTGTTAATCATTCTGCACCGAAGGAGGTTGTGAGTCGAAAGAAAAATGAATCCTTCTTTGACCGCTTAAAGGAAAGATTGTTGACGGAAACTGGAAAAGAGggattaatatgtaaaaattgtggATTCGAAAGCAAATGCTTATCGGAGCAATCAGTTCACGAAAAAACTTGTATACCTCAGGCAAATCGAGTGCAGATGAATACGTCGCTTTCAAATTTAGGATCTACGAGATGTCAAAATTGTAGACATCGTTGCAAGTCAAGCGCTGACCTTTACGTTCATATGCAAACTTGCGGTCAGAACAAAAAGCCAGTCACTGAAACTAAAATAGACACACAAAGTACGGAAATAAATGGTTCCGCTATCATTAAGGCGGAAAAAGATGCCGAACCACATCCAATGGAGAATGTAGTTTTTGTTTGGAATAATATAAATCAGAATATGAAATTTGAAACTCCACTAGATATCAGAATTAACGATGATTCCACGCTTCCAGACCATAAAAATTTTGAGGCTGAAATTGTCGATGACAGTGAAGCGATGAACTTATCGCCAAGTCAAGCGGTTGGTAAAAAAGTCTTTAAATGTCCGCATTGTCTGTTCTGGGCTTCAACTGCTTCAAGATTTCACGTTCATATTGTTGGTCACTTAAACAAAAAGCCTTTCGAATGTTCACTGTGTAAATATAAGTCCAACTGGAGATGGGATATAACGAAACATATAAAGCTAAAATCAGCAAGAGATCCTGAACATTCAGAAGCTAAAGTACTTATGACCGATGAGACTGGTCGTCGTAACTATAGCAAGTACAACAAATTCATTGCCATATCAGTATCGAATGAAAATGGCGAAAACGAATTTCATTACGTGGACCAAAACGCTGCAACCGATGGAGCTATAGATGATGAATCCTACAACGATACAGATAATATAAACAACTCGTATGATATGCAACCTTTAAACCTGCAAACATATTCAATGGAAAATAAATTTGATGGCGACAACAGGCTCTCAGATGgcaaaaaatctaaaaagacGTTatggaaatgtaaaaaatgtaactaCAAGGATACGTCCAGAGATGCATTGCTGGAACATGTGCGTGAACACTCAAAACCCGACGATACAgacgagaaaaataaaaaacttgaaaatataGTAGATCCCGCTGATTTAGCATATCGGTGTGGACACTGTAATCAGTTATCTAATTGGAAACACGTTATTCAGaGGCACTGTCGATTGAAGCACGATGGCATCATTAAAGTCATTACCACAGTTAAAACGAAGCCAGAACCTGGTTTAGCTCCAAACGAAGCCAATATGGAATCTTGCATAAAGTGCCCGTTTAAATCAAGCGACCGAAACTTAATACTAATTCATCAAAGACAGCACCAGCCTTCACCACACTCTATGTTTAAATGTAGTTTTTGTCCATTCTTTGTCAAGAACGAGGCTGAACTGGGCCAGCACTTAATATTGCATGGTGTTACTGAACCCGATGATTATATATCTAAAGCCGGTTCTAAGTCACCTCTGCCAGAACAAATGGGTCCTATAACTGTTTCTTCTGGGACTAAACGTCACAAATGCAACGAGTGCCCCTATGAAACTAACAGTAAATCTCAATTTATGTATCACGAACAATTTCATCGCATTTCTGCTGACACCCCATATAAATGTCCAGAGTGCAACTACAGTGTATCTAAAAGACACTTGCTGCACCAACACATGCGAGTACACGGGATCATTTCAAAGAAATTCGACATGGATGTGGAGACAGAAACACCGCTCGAAGATAACatgaatttttttacaaatgtagACGAAATTCCATATGTGTGGGTGTCTGCTAAAAATGAATTTCATAAAATGTACAAATGTCGGTATTGTTCGTATGTTAattctcaaaaatataaaataccgaATCATGAGGATATGCAttgtataaaatttgaaaacagTGAAGTTTTAGTCTTCAAGTGTCTGGAATGTAAATTTACGTTTGATAACCGAGTTAAGTTAGCTGAACATTCAAAATGTCACGATGAAATATACGGTCGTATTTATTGTCCCGTAGAACTCGATGTACCAGATGAGGAACAAATAGCCAGATTAAGAGAAGTTATTGAGAAGGATAGACTTAGCCATATTGATGAGCAACTCGAAGAACAACAGAGAGATGATCTGACACCTAAtgaaaacaaagaaataaaaacattgtttttcTGTCAAAAATGTCCAGCGAGATATTTTAACGAGATGGAACTAAAGGGCCACGAGAAATttcataatttcaatttaacCTATGCATACAAATGCAAGAGTTGCGAATTCTCAGTTCCACAGGAAACTGAACTGAACTCTCACAACTTTGTCCACACTGACGAGTATAATACCAGGACCAAAATGCTCAAATTTATTCACAAAGTGCACCCACTGCATCGAGATCCCAAGTTGCAGCTTGTTCATTGCCCACTTACGTCTGGAATAACATGGGTAGCTGCAAATCCCGACAAGAAGATTGAACATTATTATAAGAAATCCAGCGAGACAAAAAGCACACCAAGACAATATAATTGTAAAGAGTGCCCGgcaaaatttttcaaaaattctgCGCTCAATTACCACTTGGGACTGCATGGGGGGGACGGTGAATACAAATGTAGAAAGTGCTCTTATGCAGTAAAAAATATAGGCAACTTGGCTAAACATGAATTATTACATGAAAATGAAGGGAAACCACCACCAAGTGGCGATTATGATTCTGGAGACGATGTAGACTATAAAATTCCATTGTCAGGCACTGATTTGTTTCAAAGGAAAACAGAAGCCCAAAAAAGAGTATTGACTGATAAAGACAAGTTAGTAAAACCTAATGACCATTTCCCTCCAGTATTGCAAGCTGACCCACAATTTGGATATCTGATGCATGGGAATCCTGAGTTTATATATCCGACATACTTGAAAAATGGTCGACAAAAGGAAAAACGTTACAAATGTCACAAATGCCCATCTGCTTTTGAAAAAAGGGAGcaatacaaaattcatttatccTTGCATGGTTCAAAACAAAGGTACAAATGTGAACTTTGTGACTACTCAGTTAAATATTACGCTAACTATGTACAGCACATGAGAAAACACCAGATGAATGATGAAGCTCAAGCTGAACGAAAGAAAATGATTAATGGCTTTGCAGAAGTAGATGCTGAAAATCAAGAAAATAGGCAAGAGGATggtattgaaaatataaaactagctaTTAAAACTATGCCTAAAAGGCCACCCCGTACAGATTTTCAACAATTTTCAATTAGCGATCAACAAACGCTTCGTCTCTTACAGCGGCGGCGCTCTATAGAAAACTCAATGAAGGAAAACAACGAGGCTTCGCCAACAAAAGAACGTAAATTGCATGTATGTCTATTATGTCCGTATACAAATCAGCGTCAAGATGCATTGTGCAATCATTCTAGACGCCACGACGAGCGTGATATGATAAGGAGTAGTGGCAACCAAAAATGTTCTTATTGTAATTTAGTTGTAGTTCAGTCACATTTTCTTCGTGAACATCTTAAGACACATTTTTCATATCAAAAACATTTGAATCCCGAATGTTTTATAGCCAATGAAAATGTTTCTTTCACTGTTACAAAAATAGTTGAAAATGAGGAAGAAGTCCCAGTTGATCTCATGTTGGACGTTACGTCGAATACAGCACCAATTACCAATGAAGATAAAATACTGGTCAAAATCGATACTGGTGAAGTGCTTGAAGAggagtaa
- Protein Sequence
- MGLQYTQHEREMTGCQSDSNEATTSEMVKKEDSEHSQQSVGSSNNAYLDDSRSQKDSRKAPRPIPQLIPLTTSTPNQKPPSGEPPAKKFKESSTPESTDLNVSKKQDHLPSDTTSTPVNHSAPKEVVSRKKNESFFDRLKERLLTETGKEGLICKNCGFESKCLSEQSVHEKTCIPQANRVQMNTSLSNLGSTRCQNCRHRCKSSADLYVHMQTCGQNKKPVTETKIDTQSTEINGSAIIKAEKDAEPHPMENVVFVWNNINQNMKFETPLDIRINDDSTLPDHKNFEAEIVDDSEAMNLSPSQAVGKKVFKCPHCLFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHSEAKVLMTDETGRRNYSKYNKFIAISVSNENGENEFHYVDQNAATDGAIDDESYNDTDNINNSYDMQPLNLQTYSMENKFDGDNRLSDGKKSKKTLWKCKKCNYKDTSRDALLEHVREHSKPDDTDEKNKKLENIVDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVKTKPEPGLAPNEANMESCIKCPFKSSDRNLILIHQRQHQPSPHSMFKCSFCPFFVKNEAELGQHLILHGVTEPDDYISKAGSKSPLPEQMGPITVSSGTKRHKCNECPYETNSKSQFMYHEQFHRISADTPYKCPECNYSVSKRHLLHQHMRVHGIISKKFDMDVETETPLEDNMNFFTNVDEIPYVWVSAKNEFHKMYKCRYCSYVNSQKYKIPNHEDMHCIKFENSEVLVFKCLECKFTFDNRVKLAEHSKCHDEIYGRIYCPVELDVPDEEQIARLREVIEKDRLSHIDEQLEEQQRDDLTPNENKEIKTLFFCQKCPARYFNEMELKGHEKFHNFNLTYAYKCKSCEFSVPQETELNSHNFVHTDEYNTRTKMLKFIHKVHPLHRDPKLQLVHCPLTSGITWVAANPDKKIEHYYKKSSETKSTPRQYNCKECPAKFFKNSALNYHLGLHGGDGEYKCRKCSYAVKNIGNLAKHELLHENEGKPPPSGDYDSGDDVDYKIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKMINGFAEVDAENQENRQEDGIENIKLAIKTMPKRPPRTDFQQFSISDQQTLRLLQRRRSIENSMKENNEASPTKERKLHVCLLCPYTNQRQDALCNHSRRHDERDMIRSSGNQKCSYCNLVVVQSHFLREHLKTHFSYQKHLNPECFIANENVSFTVTKIVENEEEVPVDLMLDVTSNTAPITNEDKILVKIDTGEVLEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -