Basic Information

Insect: Helleia helle
Gene Symbol: -
Assembly: GCA_963853865.1
Location: OY971436.1:6541498-6557376[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00022 0.023 16.0 2.4 2 23 253 274 252 274 0.97

2 11 0.075 7.9 8.0 5.1 1 23 282 305 282 305 0.93

3 11 0.00045 0.048 15.0 1.6 1 23 407 429 407 429 0.99

4 11 0.07 7.4 8.1 4.0 1 23 464 486 464 486 0.98

5 11 0.00032 0.033 15.5 2.3 1 23 491 514 491 514 0.97

6 11 0.28 29 6.2 3.4 1 23 518 541 518 541 0.90

7 11 0.77 81 4.8 0.2 2 19 564 581 563 584 0.91

8 11 2.9 3e+02 3.0 0.2 1 21 625 645 625 648 0.78

9 11 5e-07 5.3e-05 24.3 1.5 1 23 657 679 657 679 0.98

10 11 0.00023 0.024 15.9 1.1 1 23 685 707 685 707 0.97

11 11 4e-06 0.00042 21.5 2.4 1 23 713 736 713 736 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00022	0.023	16.0	2.4	2	23	253	274	252	274	0.97
2	11	0.075	7.9	8.0	5.1	1	23	282	305	282	305	0.93
3	11	0.00045	0.048	15.0	1.6	1	23	407	429	407	429	0.99
4	11	0.07	7.4	8.1	4.0	1	23	464	486	464	486	0.98
5	11	0.00032	0.033	15.5	2.3	1	23	491	514	491	514	0.97
6	11	0.28	29	6.2	3.4	1	23	518	541	518	541	0.90
7	11	0.77	81	4.8	0.2	2	19	564	581	563	584	0.91
8	11	2.9	3e+02	3.0	0.2	1	21	625	645	625	648	0.78
9	11	5e-07	5.3e-05	24.3	1.5	1	23	657	679	657	679	0.98
10	11	0.00023	0.024	15.9	1.1	1	23	685	707	685	707	0.97
11	11	4e-06	0.00042	21.5	2.4	1	23	713	736	713	736	0.98

Sequence Information

Coding Sequence: ATGCACGACATAAAAGCTTGTATAATTTGTCTTAGGACCGATGTAAAAATCTTTCATATGAGTTTAGGTAAACTTCGCTCGGAATATAATTTGATTTCTGGATTAAAGACTCACAGTGGCAATGGTTTGCCAGAATATTTATGTTTGGAATGTAAATCATATATTAGACGAATGAAGATATTCAGAGAGAAATGCCAAAGGGCACATTACGTATTACAagaaatattgaataaaaacaagcagATTACAGAAGAAATTCTAAAACAGTTAAATCTTAGAACTATAAATATTGCACCAACAGTATCTTATTTAAATCAGGATCAAAGTAGAAATAGTTacgagaaaataaaatttaaatgggaTAAAGAAAACCGTACTTATGTTGAACCATTGCATATACATGTATTACAACATAATACATTTGACGAAGATACTACATACGAACTGCAGACTCCAAAGTTGGAACCAGTCCTTAATGAGAGACAGGAAAACATCAATTGTATAGATCATAAAGAAGAAGTGATTAAAGATGTGCCAGTTGAAGAAAGTATAGtagatgatgatgttgataggAGTGATGGAAATGATAATGATGCACAAATAAATGATGAAACAGTTTGTAAagacaaaaatattgataacgAAGCAGATGGGGCAAATTTAGATGAAGAATATGCCGTTATGGTTCCAATATCTACTAATGAGTCTAAAGCtgttttagatatttataaaatgttcgTACAAAATGGTAAACTCACATGTAAAGTGTGTGGGAGGAGGTATCACAATGAAAACAGATTGGAAAACCATATGAGGATGCATGATGcgcataggaATGGCCATTATTTTTGTGAACTGTGCCATTTTTATTACAAGacaaagtttttattaaaaactcatATAACAGAGAAGCACATGTACAAATATATTTGTAGAAAATGTCCCGAAGTAAATTTTGATAGGACATCGGCAAAACAACATTATATATGGTCTCATTTACAGAAAGGTACCAAAAAGCACTCCAATTGGTTCGACTCTAGGCCAAAGTGGCTCAAGAAAAAGTGTCCTAACGGTCAAAGGAGTGTACTATGTATACGTCCTGTCAAAAAATTTATAAAGCTACCGCCAGATTACCTAAAATATACACCCATTAGTCACGAAGAGCAATACGCATTGGTATTGGAACGGAAGAACTCAAGAAACTATAAACTATCACGGTATAAATGTGAACTGTGTTACAAAGGCTTTCGCGAGGACGCCACTTATAATAAGCACATGATGAAACATGATCCGAAAATATCCGGCCAGCATCAATGCGACGCGTGCAAAATTCACTGCAAGGACACGCGCAAGATGTACAAGCATATGATACAAACCCACGTGTTCAAGTATACCTGCCAGATGTGCAACTTCATCTGCACTAACAGAAATCAAGCGAAAATGCACTACAGGTGGCACAAGAATGTGACCTACTCGTGTCCGCACTGCGAGAAGGTTTACAAGAAAGCCTCGACCCGTTTAACGCACATACGACTGAAACACCCGTCAACGTTCATCTGCAATCTCTGCGGGCACAGCTTCGTCAGCGAGAACGGCCTCTACTGCCACAAGAAAATGTCGCACTCAACGCAGGAGTTAGAGGAGGACAGCAGTAAGGCGACGGGTGCGGCGGCGGCCAACCAGTCTCTGTACTGCGCGGAGTGCGACGTCCAGTTCCGAGACCACGTCGCATATTCCACGCACTTCGGCAGCTCCAGCAAGCACGCTCAGTTGAACCTGTCTTCCATCAAGTCTAACACCGAGCGCCTGGTGCGCGGGAGGCGGCAGCGGCGCCACTTCAACGAGGTGTACAACCAGGGGATGGCCATCGCACATAACTGCGAGATCTGCGACAAGTTGCTAATAAACGACCAGGCGGCGCGGCGGCACTACGACGCTGAGCACCCCGGCAGCGACTTCCGCAAGCGATACATGTGTGACATCTGCGGACACACCACCAGGCAATACTCGAACCTGATAGTGCACATGCGCACGCACACGCGGGAGAAGCCGTACTCGTGCCCGCACTGCGAGCGCCGCTTCAGCATGCCCAGCAACCGGGATCGCCACCTCGTCGTGCACACCGGCGAGAAACGCTACCAGTGTCAGCACTGCAACCGGCGGTTCTCGCAGAGCAGCGCCGTCAAGCTTCACATACAGACCGTGCACCTCAAGATCCCGTACGCGCCCTGGGACAAGAACAACCGCAAGCGGCGCAAGGAGGCCGACGCCATAACCTCCGTGCCCACGATCAAGATGGCCGAGCCCGCGCAAGACTACCTCAACGCCTACATCACGTACAACGAGTAA
Protein Sequence: MHDIKACIICLRTDVKIFHMSLGKLRSEYNLISGLKTHSGNGLPEYLCLECKSYIRRMKIFREKCQRAHYVLQEILNKNKQITEEILKQLNLRTINIAPTVSYLNQDQSRNSYEKIKFKWDKENRTYVEPLHIHVLQHNTFDEDTTYELQTPKLEPVLNERQENINCIDHKEEVIKDVPVEESIVDDDVDRSDGNDNDAQINDETVCKDKNIDNEADGANLDEEYAVMVPISTNESKAVLDIYKMFVQNGKLTCKVCGRRYHNENRLENHMRMHDAHRNGHYFCELCHFYYKTKFLLKTHITEKHMYKYICRKCPEVNFDRTSAKQHYIWSHLQKGTKKHSNWFDSRPKWLKKKCPNGQRSVLCIRPVKKFIKLPPDYLKYTPISHEEQYALVLERKNSRNYKLSRYKCELCYKGFREDATYNKHMMKHDPKISGQHQCDACKIHCKDTRKMYKHMIQTHVFKYTCQMCNFICTNRNQAKMHYRWHKNVTYSCPHCEKVYKKASTRLTHIRLKHPSTFICNLCGHSFVSENGLYCHKKMSHSTQELEEDSSKATGAAAANQSLYCAECDVQFRDHVAYSTHFGSSSKHAQLNLSSIKSNTERLVRGRRQRRHFNEVYNQGMAIAHNCEICDKLLINDQAARRHYDAEHPGSDFRKRYMCDICGHTTRQYSNLIVHMRTHTREKPYSCPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFSQSSAVKLHIQTVHLKIPYAPWDKNNRKRRKEADAITSVPTIKMAEPAQDYLNAYITYNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -