Basic Information

Insect: Helleia helle
Gene Symbol: -
Assembly: GCA_963853865.1
Location: OY971437.1:11398430-11402842[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.16 17 7.0 0.0 2 23 177 198 176 198 0.95

2 12 3.5e-06 0.00037 21.6 5.0 1 23 204 227 204 227 0.97

3 12 4.8 5.1e+02 2.3 0.2 1 7 241 247 241 256 0.95

4 12 9.1e-05 0.0096 17.2 2.7 1 23 487 509 487 509 0.98

5 12 0.0075 0.79 11.2 5.6 3 23 516 537 514 537 0.96

6 12 0.0043 0.46 11.9 5.8 2 21 546 565 545 567 0.93

7 12 0.0064 0.68 11.4 8.7 2 23 571 592 570 592 0.97

8 12 0.0075 0.8 11.1 2.0 2 23 606 628 605 628 0.96

9 12 0.00045 0.047 15.0 1.7 1 23 634 656 634 656 0.97

10 12 0.15 16 7.1 3.6 3 23 664 684 663 684 0.97

11 12 0.00061 0.065 14.6 3.3 1 23 690 713 690 713 0.97

12 12 0.11 12 7.5 0.1 3 23 719 740 717 740 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.16	17	7.0	0.0	2	23	177	198	176	198	0.95
2	12	3.5e-06	0.00037	21.6	5.0	1	23	204	227	204	227	0.97
3	12	4.8	5.1e+02	2.3	0.2	1	7	241	247	241	256	0.95
4	12	9.1e-05	0.0096	17.2	2.7	1	23	487	509	487	509	0.98
5	12	0.0075	0.79	11.2	5.6	3	23	516	537	514	537	0.96
6	12	0.0043	0.46	11.9	5.8	2	21	546	565	545	567	0.93
7	12	0.0064	0.68	11.4	8.7	2	23	571	592	570	592	0.97
8	12	0.0075	0.8	11.1	2.0	2	23	606	628	605	628	0.96
9	12	0.00045	0.047	15.0	1.7	1	23	634	656	634	656	0.97
10	12	0.15	16	7.1	3.6	3	23	664	684	663	684	0.97
11	12	0.00061	0.065	14.6	3.3	1	23	690	713	690	713	0.97
12	12	0.11	12	7.5	0.1	3	23	719	740	717	740	0.95

Sequence Information

Coding Sequence: atgAATGAATTAGAAGAAATCGAACCCGAAACTCTTACAACCAAGAACGCTGTAAAGTTCTTACTAGACGGAACGTTGAGGTTCAGAGTATGTAGATATTGCCTTACAATCTGTTCAGATCTATCAGAATTGGATGAGATACTTGAAATCGGCATTAATGGAGGTTTGCATGAAGTTACTATCAAAGATATACTTGCTAGTTTTCACCCATTCAAGGTGGATGTCAATACAAGCTTTCCAAATAAAATTTGTAGAGGATGTGTCAATTCTGCAATGAATgcatatttatttacacaacaATGTGAACGAGCTGAACGAGCATTGCGTAACTGTTTCGAAGACATTAATGAGAAATATGCCAAATTGGATCCTATTGTACCGGTTAAGAAACGGGGGAAGCGCAAACTAAACCCGAACCCTAATGTTTTatatgttgaaaataaaaatgttattgattACGCTCAacctattataaatattattaataccaaTTCAATAATTGTTGATAATGTTGAAGCAAAAAATTTGGAGTGCCAGAAATGTTGGCTGGTATTACCCAGTCCTCAGTCATTGGTGAATCACGAGGAGTCGCATCCTAAATCCATGTGGTATAATTGTAAGCTGTGTGGAAAATCATTTGTCAAACGATTTCATCTTCGGCAACATATGAAAAAGTTACACAAGTCAGATAAAATAGAGGCTTTAGATTTGCCTGATGAATATAAATGCAACGAATGTGGTGATTTGAACAAAACTTTAGGGCAACATTTTCAACATATTGAGAAGCACAAGTTTAAAAGTATCTTACGGTGTATGGTTGAGAGGCGGATGGATAGATTGTGTGTCCTATGCTTGGAGGATGGGCTGAGGATGACGAACCTCAGTGAAAATATATGTTTACATGGAGGTTACCCAGGGTTGAACGGTGAATATACCATCCAGGAAATTATATCATCAGTATTCTCTCATATCCCATGTAGCAATATTGGAACAAAAATATGCGAATCATGTCTTAATCATACTATTAGTTCGTTTATTTTCACATTAAAAATAGACCATGTTAAAAATAGACTAAACACATGTGTTACCCAACTATTATACAATTTAGATAGTTTAAGAGAAACCAGTAAGACAGTTATGATTGAAATATCAAACGATGTTATACTACCAATAGTTacttatgatgatgaagataaaatAAGTGAGATCGATGAATCCGAGTTGAACATAGAAATTCTGGAAGATGAATTTAGAGAAGAATCAAAATCTGAAACTGAGTCGGAGAGTGAGAAGGAGAATCCAGCAAAGAATGTAACGAAGACCTACAGTAGGACAATATTTAATGGATATAACCCAGCCAACCAACAAATGTTAAGCAAGAAAGTGATAGATGTATGTAATGAATTTTTGACGTTTAAAACGAAGGAAAAGATAGTTAAGAAATCTATAAAGTGCGTTTTCACATGTccgttttgtaataaattttttatatcaGATTACTTTCTTAAGAAACACATATTAAAACATGTATATATAACTTCAAATTGCAAAGACTGCTCAAAACATTTTATGTCTAGTTTTCATCTGTTTGAACACACAAAGATGGTGCATATATTGAAAAATAGCAATTACTGCTCATGTAAAGTTTGTGGCAGGACATTTactagtataaataaattaaaagcacACCAAAAATGTCACAGTATGAAAGAATGTCACCTTTGCAACAAGCATTTCAAAACGCAAAAACATTATGATGTGCACCTCCAGCGACACGCTGTGAAATTTAGATTATTAAGAAACAAAGAAAGGCAAACATGCAGTTTCTGTGAGAAATCATGTTCCAATGAGAACGAGCTTTCGTTACATGTGAATAAAGTGCACCTACAGATGAAACCGTATAATTGTGATATGTGCGAGAAGAATTATTATACGGAGTACAATTTGAACAGTCATAAACAACTACATAGTTTATTCTCAAAAGAGAATTGCATGTTTTGCAGCAAAGTGTTCAATTGTAGGAGAAATTTAGTGGTGCATGTGAGGAAGCATATCGGTATTAAGCCTCATCAGTGTCCGTCTTGCAGACAATCATTTTACTCGGACAGTCAAATGAGGAAACATATGAACGTCTTCCATGGCGGTCGGTATTGGTGTCGGTTGTGCAAAGCTGTTCTCAAAACTAGTGGTGACTTGAAAGGACATATAAGTGTTGTACATAGTGCTATGTAA
Protein Sequence: MNELEEIEPETLTTKNAVKFLLDGTLRFRVCRYCLTICSDLSELDEILEIGINGGLHEVTIKDILASFHPFKVDVNTSFPNKICRGCVNSAMNAYLFTQQCERAERALRNCFEDINEKYAKLDPIVPVKKRGKRKLNPNPNVLYVENKNVIDYAQPIINIINTNSIIVDNVEAKNLECQKCWLVLPSPQSLVNHEESHPKSMWYNCKLCGKSFVKRFHLRQHMKKLHKSDKIEALDLPDEYKCNECGDLNKTLGQHFQHIEKHKFKSILRCMVERRMDRLCVLCLEDGLRMTNLSENICLHGGYPGLNGEYTIQEIISSVFSHIPCSNIGTKICESCLNHTISSFIFTLKIDHVKNRLNTCVTQLLYNLDSLRETSKTVMIEISNDVILPIVTYDDEDKISEIDESELNIEILEDEFREESKSETESESEKENPAKNVTKTYSRTIFNGYNPANQQMLSKKVIDVCNEFLTFKTKEKIVKKSIKCVFTCPFCNKFFISDYFLKKHILKHVYITSNCKDCSKHFMSSFHLFEHTKMVHILKNSNYCSCKVCGRTFTSINKLKAHQKCHSMKECHLCNKHFKTQKHYDVHLQRHAVKFRLLRNKERQTCSFCEKSCSNENELSLHVNKVHLQMKPYNCDMCEKNYYTEYNLNSHKQLHSLFSKENCMFCSKVFNCRRNLVVHVRKHIGIKPHQCPSCRQSFYSDSQMRKHMNVFHGGRYWCRLCKAVLKTSGDLKGHISVVHSAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -