Basic Information

Insect: Helleia helle
Gene Symbol: RREB1
Assembly: GCA_963853865.1
Location: OY971414.1:6366830-6379439[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.056 5.9 8.4 1.6 2 23 93 115 92 115 0.94

2 12 0.0064 0.68 11.4 0.7 2 22 156 176 155 176 0.95

3 12 0.019 2.1 9.9 0.1 1 23 300 322 300 322 0.97

4 12 0.00053 0.056 14.8 0.8 1 23 331 353 331 353 0.99

5 12 0.00064 0.068 14.5 2.0 1 23 359 382 359 382 0.97

6 12 0.0026 0.28 12.6 1.6 1 23 733 756 733 756 0.96

7 12 0.00022 0.023 16.0 1.3 2 23 945 966 944 966 0.97

8 12 0.022 2.3 9.7 5.3 1 23 972 995 972 995 0.97

9 12 0.14 14 7.2 1.3 1 23 1026 1050 1026 1050 0.91

10 12 0.079 8.3 7.9 0.6 1 23 1073 1096 1073 1096 0.95

11 12 0.0016 0.17 13.3 0.2 2 23 1139 1160 1138 1160 0.96

12 12 0.025 2.6 9.5 5.3 1 23 1166 1188 1166 1188 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.056	5.9	8.4	1.6	2	23	93	115	92	115	0.94
2	12	0.0064	0.68	11.4	0.7	2	22	156	176	155	176	0.95
3	12	0.019	2.1	9.9	0.1	1	23	300	322	300	322	0.97
4	12	0.00053	0.056	14.8	0.8	1	23	331	353	331	353	0.99
5	12	0.00064	0.068	14.5	2.0	1	23	359	382	359	382	0.97
6	12	0.0026	0.28	12.6	1.6	1	23	733	756	733	756	0.96
7	12	0.00022	0.023	16.0	1.3	2	23	945	966	944	966	0.97
8	12	0.022	2.3	9.7	5.3	1	23	972	995	972	995	0.97
9	12	0.14	14	7.2	1.3	1	23	1026	1050	1026	1050	0.91
10	12	0.079	8.3	7.9	0.6	1	23	1073	1096	1073	1096	0.95
11	12	0.0016	0.17	13.3	0.2	2	23	1139	1160	1138	1160	0.96
12	12	0.025	2.6	9.5	5.3	1	23	1166	1188	1166	1188	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCCGCCAACGCGCCCGCGCCTCCTGCGGCCGAGCCACCCTCCTCACAACAAATCAAAACGGAAGTGATCAGCGAGGCCAAAGTTGAAACCAAAAATCAGGACGAAGATATGAAGAAAGAAAATGAAATGAGGTCTATAAGAACAACAAGCATCGACAGCGACAATCGCTCGGACAAGAGCGACGAAGATGATTGCAGAAGGAACCGCAAGAGAGCAGCGTCCGCTTCCCCGACACCCATGCCTTTAGATAAGAGGACTGCCTTACTCGAATGTTCCAAATGTTTCCAAAGATTTGACTCGAGAAACTCTTTCGAGATACATAAGTTTACAGCTCACAGAGAGGATTCTAGAACATTATACAACGATCTCACTTACCCGGGTTTCCCTAACAAAAAGTACCCAGACATATCGAGAAGTGCCTATGAACGCAACCCGCACATTCCCGAAGAATACTTACGTTGCGAAGTTTGTTCTGAAGATTTTAAATCTTTACACATGTTGGAAAACCACCGTAAAACATGCAACAAATTAAGCAATTCTGAACATGAAAGAAGAGAGGATTTCTTCTCGAAACTAGATCTTAGAAATAGATCTTTTGGTATTCCCGGTACATTAACACCCCCTATGGAAAAGTTTCCCCCGAAATATGACGATGTGCACCTCACTAACGGCATCCGTCACATCGATGCTGCGAGGGATCTTGCAGATATACAATCGATTTTAAATGTTACATCCGCGAGTAGTCTTCTGGAGAGATTGACCGGTACTCGCGTTGCGTTAGACAATTCTGTCCTCACCCCACCAGACACTTTAGTTAAAGATCGCGAGCAAGAGGAAACTCAGGATAATTTTGCAGCTGAATTTAGACGTATGAAGTTGCGTGGAGAATTCCCATGTCGCTTGTGCCCCGCCAAATTTCCGAACCTTAGGGCATTGAAAGGTCATAACAGGGTACATTTGAGTGGTACCGGTCCGGGACCGTATCAGTGTAACATGTGTCCCCACTCTTCATTAGACAAAGCTGCTCTTGTTCGTCATATGAGAACTCACAACGGCGATAGGCCGTATGAATGCGCCGTATGCAATTACGCTTTCACTACCAAAGCTAATTGTGAACGCCATTTACGCAACCGGCATGCTAAAGTGACTCGCGAGGATGTGAAAAGAGCGATCATCTACCACCCATCTGAGGATCCCAATAACGATGATATGAATACAAAAATGGCGAGGGACGAAGTTAAACGATCTCTAGCGTTCCATACACCGGAAGTTGACAGATGCAATGATATAACCGGTCGTACAACGCCATTAGCTCATTACACTCCTACATTTATTCCTGACAGACATCCCATAACTTCTCTGACTAAGTCTTTACCTGATACGCCTACCTTAACGCCGAGGGAAGTCGAGCAGCCTCTACCTAAAATTAAAGTCAAAGGATTGGGCCAATTGACGCAAATACCGGAGTTCAGAGCacctgaaataatatataaggaGAATGATATTGCACCGTTAGACACTTATAGTGAGGATGCACCAGTCGATCTGAGTACAAACGACAATAACAGTTGTGATGTCCTAGATCTTAGTAAGAAAAAAcgagatgttgatgatgaaccaCCCAAGGTATCGCCGCGAGCTTCGTTTGAAAGTTCACCATCTACTACAGCCTCACCGGCTACATCTGCATATGAGAAGACCCGATTTCTCCTGGCTCAACAAAGGCTATTTGAAAACTCTATGCCGAAATTAGACCCCGCTTATTATGCGTCCCAGCTATCTCAAATATATGCGAGTGCCGTACCTGGATTACCCAGTCTGCCATTGCCGCCATCTTTTCCACTCAATCCCTATTTTCTTCAGCCATCTTTTTTTCCTCACCCATCAGACACACAAGAACTTGCCGAAATGAAGCAGCATATACAGAAAGTAATATTTCGCGGCCTTAGCATGTCAGGTGGTGGGCTGGTAACAAATGATGCTGTAGCACAACCCAAGCAAGAGCCGGAGGAAGAAGACCAGAAACCTATACAAGTTGATACGTCGTCGACGCCCCCTCCGGCCCCAGAATCGCCGCGCCCACTCAGTAATAGTGTGATTCCACAAAACGATTCCGTAAAGATGGTCATCAAAAATGGAGTTCTAATGCCGAAACAAAAGCAAAGACGCTACCGCACAGAGCGTCCGTTTTCTTGTTCCCAATGTTCGGCGAGGTTTACACTTCGCTCTAACATGGAGAGGCACGTGAAACAGCAGCACCCACAACACTGGAGTATCAGACGCCCTACACCGCGAGCTCCCCCGCCGTACTCTCAAGACACTCTAGCTGATCGTGTCAAGTACGCCCTCCTAGCCGGACAGCTTGAACGACCGTTACAAACCGATCGGTCCCCGCCTAGAAGAGATTCGGACGAAGTTGCTGATAACGAAGAAGATGAAGATGATACTCTAATAATAGACGAGGAACCTGAAGATGGTAAATCCGGGGATCACACAGCAGCCCATCAGGCCGCCGCAGAAATACTTTTAGCTACCAGTCGTCTCGAGATGAATAAGGATTTTGATCTCAAAATTACTGGCAACCTAATCAACAAGCCGATTCCCATTCCAAGTGACAAGGTAGAAGGTATCCCAGAAGCAATCCACAAAGAGGAAACTATGCCTGTTGTGCCGACACGAAGCGATGAAGAAGAGGACGAGGAGGGGCTAGTTGCATCTACTAGTGAGGGGAATAATTCGGGCAGCGAtgaaaataaATCTGAATCCGATACTAATCAGCCACCAAAGAAGAAATCAGCTTACAGCCTAGCACCAAATCGCGTCTCCTGTCCGTATTGCCACCGCAAATTCCCCTGGTCTTCATCTTTGCGCCGCCACGTGCTCACCCACACCGGTCAGAAACCGTTCAAGTGTCCCCACTGCCCTCTTCTCTTTACCACGAAGTCCAACTGCGATCGGCATCTGCTGAGGAAACACGGTGGATCCGCTAAAGCTATCTTAGCTGAACCTATCGGTGAAGTTTCACCTCCCCATTCAAACGAGAGCCGTTCGGTCCCAGAACGACCCTACAAATGCGCTTCGTGTCCAACGAGCACGTTTTCATCGATGGAAACGTTGAAAAAGCACATGTCGTCACGCCATGGAACCGGTGACTCTCAACCTGGATCCCCGAACCCTGACGTAGAAGAGGTGGACGGTAGCTTGGTGTTCAAATGCCATCTGTGTGAGGCGTCTTTCGGAGACCAGACAGGAACTCTGGAGCATTTGCTGTCGTCCCACGCGGCGGAATACCAGCAATTGGTCAGTAAAGGTGCGATCGTGAAAATGGACGCGGCGAGCGACCGCAGCGAGAGCGCAGACGACGACGAAAGAGGGAAGTTCCCCGACCACGCGAATAGAAAGGTAGTTTGTGCATTCTGCGTCCGCCGCTTTTGGTCTGCCGAAGATCTCCGTCGTCACATGCGAACCCACTCCGGCGAGAGGCCGTTCGCCTGCGACCTCTGCCGTCGCCGCTTCACTCTCAAACACAGCATGCTCCGTCACCGCAAGAAACACCGCGAGGTGGGCGGGTTCACTGACGACGAAGACGCTTCGTCGCCGATCGTGTCGCATGACGATGGCATACCGAATGGATACTGTTACCAAAATGAAGACGGCTCCGGCACCGACCTTCCTAACAACATAAACAACAACAACTCGCCGCCATCCGCACCATACGACAAGAAGCTCAAACTGGACATGACGTCGCGCAAATATTCCACAGAAAACGAGAACGATGCTGAGAACGGCGGTGATTTGATCGGTAAACTCCTCGGTATCCCCGATAAGACCATCATCAACAAACTGCTATCTTCCGCGGACGAAGCGGCCAAGTTTCTCGGAGTGAACAAATGA
Protein Sequence: MQGAANAPAPPAAEPPSSQQIKTEVISEAKVETKNQDEDMKKENEMRSIRTTSIDSDNRSDKSDEDDCRRNRKRAASASPTPMPLDKRTALLECSKCFQRFDSRNSFEIHKFTAHREDSRTLYNDLTYPGFPNKKYPDISRSAYERNPHIPEEYLRCEVCSEDFKSLHMLENHRKTCNKLSNSEHERREDFFSKLDLRNRSFGIPGTLTPPMEKFPPKYDDVHLTNGIRHIDAARDLADIQSILNVTSASSLLERLTGTRVALDNSVLTPPDTLVKDREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHSSLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRAIIYHPSEDPNNDDMNTKMARDEVKRSLAFHTPEVDRCNDITGRTTPLAHYTPTFIPDRHPITSLTKSLPDTPTLTPREVEQPLPKIKVKGLGQLTQIPEFRAPEIIYKENDIAPLDTYSEDAPVDLSTNDNNSCDVLDLSKKKRDVDDEPPKVSPRASFESSPSTTASPATSAYEKTRFLLAQQRLFENSMPKLDPAYYASQLSQIYASAVPGLPSLPLPPSFPLNPYFLQPSFFPHPSDTQELAEMKQHIQKVIFRGLSMSGGGLVTNDAVAQPKQEPEEEDQKPIQVDTSSTPPPAPESPRPLSNSVIPQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSIRRPTPRAPPPYSQDTLADRVKYALLAGQLERPLQTDRSPPRRDSDEVADNEEDEDDTLIIDEEPEDGKSGDHTAAHQAAAEILLATSRLEMNKDFDLKITGNLINKPIPIPSDKVEGIPEAIHKEETMPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIGEVSPPHSNESRSVPERPYKCASCPTSTFSSMETLKKHMSSRHGTGDSQPGSPNPDVEEVDGSLVFKCHLCEASFGDQTGTLEHLLSSHAAEYQQLVSKGAIVKMDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREVGGFTDDEDASSPIVSHDDGIPNGYCYQNEDGSGTDLPNNINNNNSPPSAPYDKKLKLDMTSRKYSTENENDAENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00256355;
90% Identity: iTF_00926104;
80% Identity: -