Hhel026678.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971434.1:6910560-6924595[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00028 0.029 15.7 1.7 2 23 187 208 186 208 0.98 2 10 0.6 64 5.2 3.6 1 23 215 237 215 237 0.97 3 10 0.33 35 6.0 1.2 1 23 271 293 271 293 0.95 4 10 2.1e-06 0.00022 22.3 1.6 2 23 298 319 297 319 0.96 5 10 3.4e-05 0.0036 18.5 0.3 1 23 325 347 325 347 0.98 6 10 0.001 0.11 13.9 2.2 2 21 354 373 353 378 0.93 7 10 0.0035 0.37 12.2 0.9 1 23 386 409 386 409 0.93 8 10 0.022 2.4 9.7 1.3 3 23 417 440 415 440 0.92 9 10 2.3e-05 0.0025 19.0 1.0 1 23 449 471 449 471 0.97 10 10 0.062 6.5 8.3 0.2 2 23 478 500 477 500 0.94
Sequence Information
- Coding Sequence
- atgAGTGAAGAAACAAAAGTGGAATCTGACAATACTGATATACATTCAACAGTGTTTGTTAAAATTGAAGCAATTCCACATACAGAGGCTGACAACATTGATTCAGTTTATGAGTCATATAATGAAGCTAATGATGATTTTGATAATGAATACAATgactttaattatataaatcaagatattatgttggataaagatttaaaaaatgattctgaaaataaaGTAATACCAGAGGTGACTAAAAATAGTAAAgtgaagaaaaaaagaaagaccAGAACTAAAGAGAATTTTAATGAATCAGATGATGAACCTTTGAAATCCAAGAATGAAGACGAAGTTGAAGCAAcaagtaaaagaaaagaaacagaagGGACGAAAAAGGATCGTAGAAAAAGCGAAAAACCAGCAGGTGTAGTGACCAATGCAAGAGTTGTCAAAAAGTTAGAACAACTTAATGTGAGCGGAGATCAGCTGGAAATGGTCCTTCTCAGCTGGGAGGAGGTGGAGGCCGAGCGGCAGGCGGCGATGGCGCACGAGTCGTTCACGCGGCACCAGAGCCGCTGCCACGACTGCGTGCTCGGCTTCAACCACCCCATCAAACTGGAGGAGCACATGAGGAAACATGAGCCGATCAAAGATGGTCATCAATGCAGCGTATGCCGGGTCTGGTGCAAGGACACCAGGTCTCTCGCGGCCCACCGACGTAGACATCGACTTCGATGGCGGTGTCGCACGTGTGGGGGGGCGTGGTCGCGCGCGGACAACGCGGCGGACCACACTGCGCGCGCGCACGGGGCACCGCCGCCCACGCACACCTGCGCACTGTGCGGACACGCCGCGTTAACTCTTGGCAAGTTACGTAACCACATAAAGAGTCACGCAGAGCGGCAGAAGTGTGAGCTGTGCGGGAAAACCTTCCGGGACAAGACGTCGCTACGGACGCATCTATTTATCCACAAAGGCGAAAAGTACTACGCGTGTCCGCAGTGCGACAAGCGGTTTATCTTCAAGAACGCCATGCAGATCCATTTGGAGACGCACAACGCGTCTGCCCAGCTCTACTGCCACCAGTGCGACGTGATCTTCAAGAACCGCATGTCCTACAACCAGCACATGAGATATAACCTCAAACACATCGACCCCGCGAAACTCAAGTACGCGTGCGACACGTGCGATAAGAAGTTCGCGAAGGCGACGCGCCTGCACGAACACAAGATGGCCGTGCACCTCAAGCTAACGCCCATCGCCTGCACCGTACCCGGCTGTCACTTTACATGTTCCTCCCGACCCGTCCTCCGGACTCACATCAGGATGCAACACCGCGACGGGCGCGACAAGAGAAACCACGTCTGTCATCTTTGCGGAAAGGCATACGCCAGTAAGAACAGTCTAGAAGGGCACCTGCGGGCGCACACAGGTGAGCGGCCGCTACGCTGTCCTCGCTGCCCCGCGTCGTTCGGCTACGACGCGGCGCTCTATAACCACGTCAAACACGTGCATCTCAAACATAAGaaAATTCGCAGCAGAGGTCCGCAAACTGCTGAATGGTCTCTTACAATACCGATACCCAATGATGAAACGTGA
- Protein Sequence
- MSEETKVESDNTDIHSTVFVKIEAIPHTEADNIDSVYESYNEANDDFDNEYNDFNYINQDIMLDKDLKNDSENKVIPEVTKNSKVKKKRKTRTKENFNESDDEPLKSKNEDEVEATSKRKETEGTKKDRRKSEKPAGVVTNARVVKKLEQLNVSGDQLEMVLLSWEEVEAERQAAMAHESFTRHQSRCHDCVLGFNHPIKLEEHMRKHEPIKDGHQCSVCRVWCKDTRSLAAHRRRHRLRWRCRTCGGAWSRADNAADHTARAHGAPPPTHTCALCGHAALTLGKLRNHIKSHAERQKCELCGKTFRDKTSLRTHLFIHKGEKYYACPQCDKRFIFKNAMQIHLETHNASAQLYCHQCDVIFKNRMSYNQHMRYNLKHIDPAKLKYACDTCDKKFAKATRLHEHKMAVHLKLTPIACTVPGCHFTCSSRPVLRTHIRMQHRDGRDKRNHVCHLCGKAYASKNSLEGHLRAHTGERPLRCPRCPASFGYDAALYNHVKHVHLKHKKIRSRGPQTAEWSLTIPIPNDET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00926107;
- 90% Identity
- -
- 80% Identity
- -