Basic Information

Insect: Helleia helle
Gene Symbol: gtf3a
Assembly: GCA_963853865.1
Location: OY971434.1:6553094-6571575[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0036 0.38 12.1 6.4 1 23 28 50 28 50 0.98

2 12 0.00052 0.055 14.8 1.1 1 23 57 80 57 80 0.93

3 12 6.2e-05 0.0066 17.7 4.1 2 23 89 111 88 111 0.95

4 12 0.00048 0.051 14.9 0.3 2 23 118 139 117 139 0.97

5 12 0.0001 0.011 17.0 0.1 1 23 145 169 145 169 0.94

6 12 0.00051 0.054 14.8 0.6 2 23 176 197 175 197 0.96

7 12 5.2e-05 0.0055 17.9 1.2 2 23 205 227 204 227 0.94

8 12 0.012 1.2 10.6 4.0 1 23 233 256 233 256 0.97

9 12 0.00087 0.092 14.1 4.7 2 23 264 286 264 286 0.96

10 12 6.4 6.8e+02 1.9 5.5 1 23 729 751 729 751 0.90

11 12 1.5 1.6e+02 3.9 0.2 2 23 762 782 761 782 0.84

12 12 0.01 1.1 10.7 3.1 1 23 903 925 903 925 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0036	0.38	12.1	6.4	1	23	28	50	28	50	0.98
2	12	0.00052	0.055	14.8	1.1	1	23	57	80	57	80	0.93
3	12	6.2e-05	0.0066	17.7	4.1	2	23	89	111	88	111	0.95
4	12	0.00048	0.051	14.9	0.3	2	23	118	139	117	139	0.97
5	12	0.0001	0.011	17.0	0.1	1	23	145	169	145	169	0.94
6	12	0.00051	0.054	14.8	0.6	2	23	176	197	175	197	0.96
7	12	5.2e-05	0.0055	17.9	1.2	2	23	205	227	204	227	0.94
8	12	0.012	1.2	10.6	4.0	1	23	233	256	233	256	0.97
9	12	0.00087	0.092	14.1	4.7	2	23	264	286	264	286	0.96
10	12	6.4	6.8e+02	1.9	5.5	1	23	729	751	729	751	0.90
11	12	1.5	1.6e+02	3.9	0.2	2	23	762	782	761	782	0.84
12	12	0.01	1.1	10.7	3.1	1	23	903	925	903	925	0.98

Sequence Information

Coding Sequence: ATGCATAAAGATGCCGGCCCGACACCAGTGGGAGGCTTGCTGACGACGACATGCCGTCGCCGGCATGCAGACTCCAAGCCGTTTAAATGTTTGTTCTGCGACTACGCGTGTCGAGACAGCTCGACGTTGAGGAAGCACCATGAAAGGCACACGGGCATCGAAAGAATATATCAATGCGCCACCTGCTTGAAgagttttaaaaagaaatacctCCTGCGGGACCACGTGTCGGAGGTGCATCTGCAGATGGATCTGAAGACGAAGCCCTGCCGCCACTGCGACAAGATGTTCAAGTCGACCTCTCATCTAACCGCCCATGTCcAAAGGGTCCACGAGAAGATATACGAGACGCGGTGCGACATCTGCGGCGCGGAGCTGAGCAGTCGCTACAACATGGAGACGCACCTGCGCTCGCATCTACGGCACCGCCCCTTCGTGTGCGGCGTGCGCGGCTGCGGGAAGACCTACAAGGATAAAggcGCCCTTCGAAAGCACTCCATAATACACTACCCGGAGAAGCATTTGGTGTGCGAGATATGTGACAAGCGGTTCACGAGAGTGGGTCGGTACAAGAGCCACGCGCGCCAGCACCGGCCTCGGGTGAAGAGCGTCGTCTGCGACCACTGCGGAGTCAGTTTCTACAGCAAGAACTACCTGCGCACGCACATGATCAACAAGCACCTGTCGCGGCGGCAGTTCGTGTGCGACCACTGCGGCTTCTGCTCACACAACAAGCCGGGCCTGGTCAAACACCTCAAGATGGGACACGACGACACGGAACTGGACCgacgatgtaaaatatgcaacAAAATATTCAAGAAACACGTGTACCTCAAGTCGCACTACCGGAATACGCACTTCATCAAATACAAGACAGTGGTCCGAACGAAAAAGGCGTACATTAAAGAAGAACCGGCGGAGGAACCAGACGTTATACAGAACTTGCTCGAGGTGCGACACGACATGATGCCTGAACCGGAGGCGGACATAAATGCGGCGGATGTGAAGGCGCTGATGATGAATGCCGTGGAAGCCACTTCTGAGGGGCTGGAGACTCTGTTCATGGACTTGCTGCAGCCGCCTGAAAAAGGCGAAGAAGATTATTCTATGCTATACGACTCGGCGTGCGAGGAGAAGGCTCAAAAGTGTCTAAAACAGCTGCTGAAGAAAGCGCAGCAGAGAAAGGAGAGAAAAGAAAAAGTGGTCGTTATTTTAGAGCATTCTTCTATCGAAGTAAACAAAGATGCAGTATCATCAAACATTTTTAGCGGAGTTAGTAGCGAGAAAAATTCTCAACAACTCAATGAAACTAATATCAAAGAGGAAATAAATAGTTCAGTTACACAAGACACTTGTAAAGTTGGTAAGGAAAAGAACATTAAAAGTGGAATTTTTACTCAAAACCAAGATAAAACTATTGATACTGATTTGAAATCAAAACAATTGTGTAATGAATTTAATAAAGATGATACTATACGCTGTAAAATGACAAAGAAAAGTAACATTGAAACTAAAGATATGGGATCTGAAGATTCCGCTTCTAAAGAAGGAAATGAAACATATTTAGAAAGTAATCAAAATAGTAAAGGAATAAATAGTAAAGGAATAAATATAAGCTGCGATATGAACAAGAAAAAAGGACAAGGTAAAAGTAAATCAATTCGAACTAATACTAAAAGGAAAAACAAAAGCGTAAAACAATCAAAGAAACGTATATactttaaaattgataaaatatctacatattCGCCAAATGTAATGGACGATTGTAATGAAACACATGCAGAAAGTAAACATACAAACCAACGATATAGTAAGGCTAACAGAAGAAATATTGAGACTGCAAATGAAACTTTAGCAGACATGCAAAATGAAGACATCACGGAAAGTAATAAACATTTGCAAGGAAATGAAATTACTCACACAGTATTATTACAAGATGTAAAAATTGAAGTGGAGAGAGATGTTGAAAATAGTCCTACATATGAAAGAAAAATAAGCAGTGATGAAGACTTAGGAACAAACGAATATAATTCTGAACTCGGTGAAAATGAAAAAGTACAAAACGCAAAATCACAAGATGCACTAAATGAAGGTAGCATAGACCATGAAGAGGATTCAACTAGTCGAAGCAATGCCCCAATGTCTCTATCAAAACAAACAACGGGAATGAAATTCAATTCACATCAATGCTATGAATGTTTTAGGCTTTTCGAGACCAAAGAGAAACTTCTAGACCATTGCAAAgaacattataatttatgtaacgAGACTATTTTGAAAAAGTGTCCTCTATGCGATTACGTTACGACATGGGATCTAGCTcgtcatattaaattaatgcACAAGGTCGACGTTAAAATAGGTCAACCGGGattgaaagaaaagaaagacgAATCGGGCATTCGGTACTTTTACAATGTTGAAAATGAAATAGTGACTAAAATAGACGTCATCCCTAgtgtaaaaaatctaaataaacgagCATATATGAAACTAGACAAATTAAAAAGACAGGCTACGAACAAAGCAGTACAAAAAgacaaattagtaaaaaaagatAGAGAATGGATCGTTGAGAAatgcaatattaatattaaagctGACGGCGTAATGATACCAGATTGGAAAAAGATAGGTGGCGACTATTTTGAGAAATTAAAAATGATGGCTACACTAGCTAAGAATGAGGGCAAAAGAATATTGTATCCCTGCAATAAATGCGAAAAAATATGTCAAACCCTCGCTGCCTTGACATTGCATTACAGACATCACGATCCcaataaaaaaccatttaaaccTAAAGTTTGGAAACATAAAATGAAAGGAGAACAAAAAACTATAGAAGTTAATGACGATAAAAAAGTCGATACCACTAATCGATATAAAGAACCGAAACCGATTGTGAACAAGCACAAGTGTGATCCCAAGTTGAAGGAATTCTACGAAAACAACATTAAGGGGGGAGATATAGAATTTTGGCAGTTTTTGAAAATCTACAACAAAATGACCAGAGATAATGTCAAGGATTTTAAAGATTTAGAACACAGGATAGAATTTGGTACTCATCTGCCagaaattatagaaaataaaaatgttttcaatgCTGACAGTACGTCCACTCTGGAACCTGTTCCCAGCACTTCGAGTCCTTTTGAGTCTTCCATTAAAGTGACTACCAAAGTGAAGGTTTCCAGGTTGACAAGTAAGAACGCGTTTAAAAGGGTTGTTAGGATAAGTAAAAAAGAATGTCAAAAgcgaaatgaaataaaacagaCACTGAGGgataaaattagaaaaacgaCAGCTTCATAG
Protein Sequence: MHKDAGPTPVGGLLTTTCRRRHADSKPFKCLFCDYACRDSSTLRKHHERHTGIERIYQCATCLKSFKKKYLLRDHVSEVHLQMDLKTKPCRHCDKMFKSTSHLTAHVQRVHEKIYETRCDICGAELSSRYNMETHLRSHLRHRPFVCGVRGCGKTYKDKGALRKHSIIHYPEKHLVCEICDKRFTRVGRYKSHARQHRPRVKSVVCDHCGVSFYSKNYLRTHMINKHLSRRQFVCDHCGFCSHNKPGLVKHLKMGHDDTELDRRCKICNKIFKKHVYLKSHYRNTHFIKYKTVVRTKKAYIKEEPAEEPDVIQNLLEVRHDMMPEPEADINAADVKALMMNAVEATSEGLETLFMDLLQPPEKGEEDYSMLYDSACEEKAQKCLKQLLKKAQQRKERKEKVVVILEHSSIEVNKDAVSSNIFSGVSSEKNSQQLNETNIKEEINSSVTQDTCKVGKEKNIKSGIFTQNQDKTIDTDLKSKQLCNEFNKDDTIRCKMTKKSNIETKDMGSEDSASKEGNETYLESNQNSKGINSKGINISCDMNKKKGQGKSKSIRTNTKRKNKSVKQSKKRIYFKIDKISTYSPNVMDDCNETHAESKHTNQRYSKANRRNIETANETLADMQNEDITESNKHLQGNEITHTVLLQDVKIEVERDVENSPTYERKISSDEDLGTNEYNSELGENEKVQNAKSQDALNEGSIDHEEDSTSRSNAPMSLSKQTTGMKFNSHQCYECFRLFETKEKLLDHCKEHYNLCNETILKKCPLCDYVTTWDLARHIKLMHKVDVKIGQPGLKEKKDESGIRYFYNVENEIVTKIDVIPSVKNLNKRAYMKLDKLKRQATNKAVQKDKLVKKDREWIVEKCNINIKADGVMIPDWKKIGGDYFEKLKMMATLAKNEGKRILYPCNKCEKICQTLAALTLHYRHHDPNKKPFKPKVWKHKMKGEQKTIEVNDDKKVDTTNRYKEPKPIVNKHKCDPKLKEFYENNIKGGDIEFWQFLKIYNKMTRDNVKDFKDLEHRIEFGTHLPEIIENKNVFNADSTSTLEPVPSTSSPFESSIKVTTKVKVSRLTSKNAFKRVVRISKKECQKRNEIKQTLRDKIRKTTAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -