Basic Information

Insect: Helleia helle
Gene Symbol: -
Assembly: GCA_963853865.1
Location: OY971416.1:23312160-23321058[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4.3 4.6e+02 2.5 2.8 1 23 250 273 250 273 0.95

2 10 0.064 6.8 8.2 0.3 2 23 300 322 299 322 0.95

3 10 8.9e-05 0.0094 17.2 0.2 1 23 345 367 345 367 0.98

4 10 2e-05 0.0021 19.2 0.6 1 23 371 394 371 394 0.97

5 10 0.0077 0.82 11.1 1.9 1 23 399 422 399 422 0.94

6 10 0.29 31 6.2 1.3 1 21 428 448 428 451 0.84

7 10 8e-08 8.5e-06 26.8 2.7 1 23 458 481 458 481 0.98

8 10 0.002 0.21 13.0 3.2 1 23 487 509 487 509 0.98

9 10 3.5e-07 3.7e-05 24.8 1.5 1 23 515 537 515 537 0.99

10 10 4e-05 0.0042 18.3 1.8 1 23 543 565 543 566 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4.3	4.6e+02	2.5	2.8	1	23	250	273	250	273	0.95
2	10	0.064	6.8	8.2	0.3	2	23	300	322	299	322	0.95
3	10	8.9e-05	0.0094	17.2	0.2	1	23	345	367	345	367	0.98
4	10	2e-05	0.0021	19.2	0.6	1	23	371	394	371	394	0.97
5	10	0.0077	0.82	11.1	1.9	1	23	399	422	399	422	0.94
6	10	0.29	31	6.2	1.3	1	21	428	448	428	451	0.84
7	10	8e-08	8.5e-06	26.8	2.7	1	23	458	481	458	481	0.98
8	10	0.002	0.21	13.0	3.2	1	23	487	509	487	509	0.98
9	10	3.5e-07	3.7e-05	24.8	1.5	1	23	515	537	515	537	0.99
10	10	4e-05	0.0042	18.3	1.8	1	23	543	565	543	566	0.95

Sequence Information

Coding Sequence: atggatGCCAAGAATACAACCTATGGTATATGTAGATGTTGCTTGGTGATGGGAAACCACAAAGATGTAATGAAAGAATATTACAGAAATGGAAAACGAGAGGTGTACATGGATATTTTTATggaatgttttaatttatacttatCAACAAACAATCAGTTGAGCACCCTCATCTGTTTGTCGTGTATTCAGCGTCTCAAAGAAGCTAACAGTTTTCGAACCATGGTGATAAAGTCTGAACAAGAGCTGCTTAGCACTGTAATTGATAAGGAAACTGTATTTGTTAAtgtgCCTGTTGGAGAGTTGCAAACAGATGATATGAAAACAGAACACCAACCAGAAGTGAAAGAGGAACCAATTGACCAACTTATGGAGGTGGATTCTGATTATACACCTTGGGATGATAATGATACCAGTGGGTATATTTATGATTCAGATGTGAAGATTTTAGATGAAAAAGACTTAATAGATGGGGAAGCGGAACTTCTAGCAAGGTTCCCGCCTGGTTACAAATTACCAACTCGGCAATCTCTTTATGGAATTTGTCAGGGTTATGTAACAAAGTTGGATCTACTTAAAGgtaaattaatatttccaaAAATGATCGCCACGCTACTAGAAACAGAACATGAAAGATTGTCTAAAAAGCGGATTTACTTGACGGAAAAGATGGCGCACATATTAAACGCGTCAACCCTTCTAGAAAACTCCAATGTCACtccatttaaaagtaaaaatcgtTCTGGATTCCCATGCTTCTACTGTAGAAATATTTTTGAGTGTTTGGACAAATTAAGGGAGCACCAGGAAAAGAATCACAAAAGGGGGGAAATTCGGAGGATTCTTGGTACATATGGGGCGGAATGCTTAGTTGTATATGTTGACACCACAGATATGAAATGCCTCATTTGTGATCAAAAGATACCCAGTCTGATGGAATTAAAAAGTCATTTAACGAAATTACATAAGAAGAAAATGCATCCGGAATTTACGGATCGAGTCATTCCTTTTAAGTTATCCCAGAATAATGTATACGAGTGCCAAGTGTGCGGTTTTAACTTCGAGACGTTCGGATCTATAGAACGTCACATGAACGTGCACTACAGAAACTATGTTTGCAATCAGTGCGGGACTGGTTTCGTCACGAAATACAGGCTCAAAGTTCACGTAAAAAGTATGCACATTGGCGGGAATTTCCCGTGTGAAATATGCAAAAAAGTCTACACTACGCAACAGAAACATAAAAACCACGTAGACACGGTCCACAGAATGGTGAAAAGATTCAAGTGTCCAAAGTGCCTGGAAAGATTCTCCGAATATTTTCGTCGTCAAAAGCATTTGGTTGAAGTTCACGGCGTGGCGCCTTTGCAATACAAATGTAATGTGTGCGATAAATCATTCGACCGACGGTATACGTTATCACGGCATATGAAACGTGACCATTTAGACGAACGAGATTATGAGTGTCAATTGTGTTCCTACAAATGTTTTACGAATAACGAGCTAAGAGTTCACATGATTAAGCACAATGGAGAAAGAATATACGAGTGTTCGGTGTGTAAAAAATCCTACGCCAGGAAGAAAACATTAAGGGAACACATGAGAATACACAATAATGATAGGAGATTCGCGTGTGCTGTCTGTGGTCAAGCTTTCGTTCAAAAATGCAGTTTAAAAGGGCACATTAAGACTCACCACATTGAATATAGTTTGCCACCTAATTTCTAG
Protein Sequence: MDAKNTTYGICRCCLVMGNHKDVMKEYYRNGKREVYMDIFMECFNLYLSTNNQLSTLICLSCIQRLKEANSFRTMVIKSEQELLSTVIDKETVFVNVPVGELQTDDMKTEHQPEVKEEPIDQLMEVDSDYTPWDDNDTSGYIYDSDVKILDEKDLIDGEAELLARFPPGYKLPTRQSLYGICQGYVTKLDLLKGKLIFPKMIATLLETEHERLSKKRIYLTEKMAHILNASTLLENSNVTPFKSKNRSGFPCFYCRNIFECLDKLREHQEKNHKRGEIRRILGTYGAECLVVYVDTTDMKCLICDQKIPSLMELKSHLTKLHKKKMHPEFTDRVIPFKLSQNNVYECQVCGFNFETFGSIERHMNVHYRNYVCNQCGTGFVTKYRLKVHVKSMHIGGNFPCEICKKVYTTQQKHKNHVDTVHRMVKRFKCPKCLERFSEYFRRQKHLVEVHGVAPLQYKCNVCDKSFDRRYTLSRHMKRDHLDERDYECQLCSYKCFTNNELRVHMIKHNGERIYECSVCKKSYARKKTLREHMRIHNNDRRFACAVCGQAFVQKCSLKGHIKTHHIEYSLPPNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00688057;
90% Identity: iTF_00926012;
80% Identity: -