Basic Information

Insect: Helleia helle
Gene Symbol: Clamp
Assembly: GCA_963853865.1
Location: OY971421.1:17239090-17246354[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.3e-06 0.00078 20.6 0.6 1 23 122 144 122 144 0.99

2 7 4.3e-05 0.0045 18.2 2.3 1 23 334 356 334 356 0.97

3 7 2.2e-05 0.0023 19.1 0.1 1 23 362 384 362 384 0.98

4 7 3.3e-06 0.00035 21.7 3.0 1 23 390 412 390 412 0.99

5 7 1.8e-06 0.0002 22.5 0.4 1 23 418 440 418 440 0.98

6 7 3.1e-06 0.00033 21.8 1.2 1 23 446 468 446 468 0.99

7 7 8.6e-05 0.0091 17.3 0.2 1 23 474 496 474 496 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.3e-06	0.00078	20.6	0.6	1	23	122	144	122	144	0.99
2	7	4.3e-05	0.0045	18.2	2.3	1	23	334	356	334	356	0.97
3	7	2.2e-05	0.0023	19.1	0.1	1	23	362	384	362	384	0.98
4	7	3.3e-06	0.00035	21.7	3.0	1	23	390	412	390	412	0.99
5	7	1.8e-06	0.0002	22.5	0.4	1	23	418	440	418	440	0.98
6	7	3.1e-06	0.00033	21.8	1.2	1	23	446	468	446	468	0.99
7	7	8.6e-05	0.0091	17.3	0.2	1	23	474	496	474	496	0.96

Sequence Information

Coding Sequence: ATGTTCACGACAAACACTGTACAAGCCGGTACGGTTCCGACGTTACAATATCAAGAACATGCAGCTCAAAAGTCGCAAGGCAAAAATATTGAGAATGTTCAACAAAAAAccactcaacagacacaacCACAACAGGAATTTCCCACATTCTGTTATACCACAAATGTAAATATGATTGGTAAAATTGGTGCTGGGACTACAAGTGGCGGTGGAGGAGTTGCTGGCAGTGTAAATATAGCACAACTTACTACCAGTGATGACAAAACATGTTACATAGCCCAACCATTCTCATATAATTATGCTCTTGTTAATCAAATGCAAATAGCACCAAACGGCATTCAGAACACTATATCAAATATAAGCTTCAAATGTGATGTTTGTGGTTTGATGTTTGGACATTTGTCCCTACTGAATGCACATAAACGAATACATGCTCAAGATTCAGATAGCAATATTACAGTAGTAGCCACCGGTGTTACATCAGCAAATGAAGTGGCGATGCCACCTCATATACAAATCTTATCATCAGATCCGAGTGAGCAACAGCAACAACCGCAACATCATGTTCAGATTCAAGATACTAAACCAGTAATTATAGACAAATCTGTTAAATGTATAACATGTGGTGGTCCTATACCAAACAATCCTAAAAGAAAGGGCCCCAAGCTCATTAGATGTGAGAATTGTATTGCTCAAGACTCGGTTGATCAACGAAATAATCAATtAAATGCAACTCAAATATTTGTTGCTACGGATGACAGTGTGAAATTTGAAGTGGGAGGCGTAAGTGGGGTACAAAATTCAAGTGATCCTCTAGCGCCCGCTCAAGCCAATCAACAAACACAACAGACTCAACAGCAAAAACCttTACCTGGACATCATCCTGTGAAAAAAAGGAATTTAGCTTCAGTAACAAAATGTCAAAATTGCAATGGGTCAGGCATCATATTGGTAGGaggcaacaaaaataaaaacaatcaaaCAAATGCAGAGAAACCATTTCATTGTAATATTTGTGGGGGATCCTTTTCAAGATACTCGTCCTTATGGTCTCACAAAAAATTACATTCAGGAGAGAAGAATTTTAAATGTGGAATATGTGGCATTGCTTTTGCAAAGGCTGTATATTTGAAAAACCACTCTCGGATACACACTGGGGAAAAACCATACAGATGTAGTACATGTGGGATGCAGTTTTCGCAGTCACCGCATTTGAAAAATCATGAGAGAACACATTCTGGTGAAAAACCATATGTTTGTGAAGTGTGTGACAAAGGTTTTGCAAGACATGCAACCTTATGGAACCATCGTCGTATTCACACAGGGGAGAAACCTTACAAgtGTGAAACATGTGGTTCGGCGTTTAGTCAAGCGGCTCATcttaaaaatcatacaaaagtGCACTCCGGGGAGAAACCATTCAAGTGCGACATATGTACTGCTGCTTTTGCTGATAGATTTGCATTGAAAAGACATAGAGGAATTCATGATAAATatgGACAAACTGCACCATTGTCGTCCAGAGTACAGCAAAATCAACAAGAACAACAGAATAATCAACAGCAGCCAAGTGAGCAACAAAACACCCAAGCAACCGTAGAAGTGGAACACCGTACTGAACAGACTCTATGA
Protein Sequence: MFTTNTVQAGTVPTLQYQEHAAQKSQGKNIENVQQKTTQQTQPQQEFPTFCYTTNVNMIGKIGAGTTSGGGGVAGSVNIAQLTTSDDKTCYIAQPFSYNYALVNQMQIAPNGIQNTISNISFKCDVCGLMFGHLSLLNAHKRIHAQDSDSNITVVATGVTSANEVAMPPHIQILSSDPSEQQQQPQHHVQIQDTKPVIIDKSVKCITCGGPIPNNPKRKGPKLIRCENCIAQDSVDQRNNQLNATQIFVATDDSVKFEVGGVSGVQNSSDPLAPAQANQQTQQTQQQKPLPGHHPVKKRNLASVTKCQNCNGSGIILVGGNKNKNNQTNAEKPFHCNICGGSFSRYSSLWSHKKLHSGEKNFKCGICGIAFAKAVYLKNHSRIHTGEKPYRCSTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCETCGSAFSQAAHLKNHTKVHSGEKPFKCDICTAAFADRFALKRHRGIHDKYGQTAPLSSRVQQNQQEQQNNQQQPSEQQNTQATVEVEHRTEQTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417101;
90% Identity: iTF_00262084;
80% Identity: -