Hhel000656.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971414.1:8170285-8172690[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.027 2.9 9.4 0.2 5 23 375 393 374 393 0.96 2 11 0.052 5.5 8.5 0.0 3 23 401 421 400 421 0.92 3 11 4.1 4.4e+02 2.5 0.7 3 23 430 450 428 450 0.78 4 11 1.4e-07 1.5e-05 26.0 1.6 2 23 455 476 455 476 0.98 5 11 0.00018 0.019 16.2 2.9 1 23 482 504 482 504 0.98 6 11 0.045 4.8 8.7 0.1 1 20 508 527 508 529 0.94 7 11 0.00012 0.013 16.8 0.2 1 23 565 588 565 588 0.96 8 11 5.9e-05 0.0063 17.8 0.1 1 23 609 631 609 631 0.98 9 11 7e-05 0.0074 17.5 4.5 1 23 637 659 637 659 0.98 10 11 0.0026 0.27 12.6 0.3 3 23 667 687 665 687 0.98 11 11 9.3e-05 0.0098 17.2 3.0 1 23 693 716 693 716 0.96
Sequence Information
- Coding Sequence
- ATGGAATCGTGGTCGAATTTGTGCCGATGTTGTTTGTCCCCCAATTCTGAAGTGTCACTTATAAATAATGAAGATAATGTGAAAGAGAAATTTTTAGAAGTAACAACCATTCAGGTTAAAGAAGATGATGGGTTACCTCAAAAACTTTGTTTAGAATGTTTCTCAATCATGACTTCAGCATATCATTTCCGTACACAATGCATGAAAATGGATAAGGAACTAAGAGTACAACTCGatgcaataataaaacaaacaaaacacattATCTCACCTCAGTTTTCTGAGATAGACGCTCAAGTAAAGTCTAATGGGGACATGTCTGTTGAAGATATTGCCAAAGAGTCGATGAAACAACTagaatgtattattaaaagtgaacctaatgatgacgacgattattattatgtccTAGTTATAGACAACCCAAAAGACAAAGAAGACAAAGATGGTGATCTAAAGAAGGAAATTAGTGAAAATATACAGGAACCAGAATTGAAGAAATCTATAAAACAAGAAGTTGACACTAGTATTTACGAAAGTTCTCATACCAAAAAAGCATTACCAGAAGTAAGCCAATTTGAAAACTGTGTTGATTCATTCCTTGTGTCAAATCCACCTATTCCCATCAATGTGCCAGCTACAATATTAGAAAATGAAGAACAAGATAACGAGAGTCAGTATGAAATGGATATTGATGCCAATCAGGAAGCAGAAGAACAGGAATTATCATTTGTGCAAAACGAAGGACTAACAATTATCGAAAAGCCTTCAGTAACTGTTGTAGAAAATACTCAAGGACAATCTATGGATGACTATTCTGTAGCACTGACTGAGAAAGATGTAGAGAActctaaaaatatcattaaaatattgtcaCCATCAGGAAGTGAACaagcaatatttttaaagaatgaTGACAGTATCAAATACTTGACTGATGCTCAACTGTCCAAGTCCGACAATACTGATATACTGCAAGAACAGCAAGTTATATTCTGTGAAGGAGAAGACTCATCTCAGTTTCAAATACTTAAATGTGATGGATCAGAATTAGTCATAGAGTATACTGATGAGAGTCAAATTGCCACTGTCCTTCAGCAGGAGGATGGTACATTTCTCTGTGATTGTGGAGAACAGTTTGATGATTTAAGTCAGTATGAAGAACACCAATACAAACATAATCCTGCGGGAGATCTTCTGTGTAATTTATGTGGTAAAGGTTTTGAGACACCTGAGATTCTGGCTGGTCATATGGTCTTGCATAGTGTTACTACTGTATTTGTCAAATGTCTATTTTGCAGTCAACTTGTGAAAAGGAATAATTTGACACAGCATatcaaatatgtacataatagtaAGCCAAAATGTAATGTATGTCAAAAAACATTTGCTAACCAAAATAATCTTAAACGCCACATGATGATCCATAAAGGTATTAGAGAGTTTGAATGTGACATTTGTCACAAGCGATTTGGCCAAAAAATAACAATGCAGACACATAGATTGACACACATTAACCCCTATGTGTGTAATCAATGTGACAGTTTGTTTGAAAACAAAGAAAGCCTAGCAGAGCATAAAGATAGTGAGCAGTGTTCTAAATCAAAGGCACAAAGAGTAAACAAAGTCAAGGAGGAACTTATGAAGACTGTCAAACAAGAAGTAACCACTAATTTAGGAAAATTACTAGGTTATGCCTGTTCTCtttgcaaaaaaatgttttcacttGAATCAGCATTAGAACAGCACATTGAAAGTACACATATTGAAAGATTTGATGTGAGCTTAGATGATCAGTCCCTTAATAGAAAGGCTGCTAAAAGATTTCCATGTAGCATTTGTGGGAAGGGATGTGCAAGCCAAGCAATGTTAATAATGCATGAAAGGGTGCATACCAATGAAAGACCATTTCCATGTCAGCTATGTTCTTTAcgatttaaaactaaaactcaTTTAAGAACTCACCAACTAACACATACTAGGGAAAAGAAATTTGGTTGTTCTGTTTGTATGAAATTCTTTGCCCTAAAGGGTAATTTAGTTGTGCATTTACGGACACATACTGGTGAAAGACCTTATGTATGTCATTTGTGCAATGAAGCATTCATTGATTCAAAATACCTTAAAAAGCACAAGCTAAAGAAACATGCAATCGATAACCTCCCATGGAATCAATATAGCACTTAA
- Protein Sequence
- MESWSNLCRCCLSPNSEVSLINNEDNVKEKFLEVTTIQVKEDDGLPQKLCLECFSIMTSAYHFRTQCMKMDKELRVQLDAIIKQTKHIISPQFSEIDAQVKSNGDMSVEDIAKESMKQLECIIKSEPNDDDDYYYVLVIDNPKDKEDKDGDLKKEISENIQEPELKKSIKQEVDTSIYESSHTKKALPEVSQFENCVDSFLVSNPPIPINVPATILENEEQDNESQYEMDIDANQEAEEQELSFVQNEGLTIIEKPSVTVVENTQGQSMDDYSVALTEKDVENSKNIIKILSPSGSEQAIFLKNDDSIKYLTDAQLSKSDNTDILQEQQVIFCEGEDSSQFQILKCDGSELVIEYTDESQIATVLQQEDGTFLCDCGEQFDDLSQYEEHQYKHNPAGDLLCNLCGKGFETPEILAGHMVLHSVTTVFVKCLFCSQLVKRNNLTQHIKYVHNSKPKCNVCQKTFANQNNLKRHMMIHKGIREFECDICHKRFGQKITMQTHRLTHINPYVCNQCDSLFENKESLAEHKDSEQCSKSKAQRVNKVKEELMKTVKQEVTTNLGKLLGYACSLCKKMFSLESALEQHIESTHIERFDVSLDDQSLNRKAAKRFPCSICGKGCASQAMLIMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCHLCNEAFIDSKYLKKHKLKKHAIDNLPWNQYST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00926004;
- 90% Identity
- iTF_00926004;
- 80% Identity
- -