Hhel029629.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971437.1:10971186-10995172[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00026 0.027 15.8 0.7 1 23 562 584 562 584 0.96 2 11 0.00036 0.038 15.3 0.9 1 23 599 621 599 621 0.95 3 11 1.2e-05 0.0012 20.0 1.3 1 23 627 649 627 649 0.99 4 11 8.1e-06 0.00086 20.5 4.1 1 23 656 678 656 678 0.99 5 11 1.8e-05 0.0019 19.4 0.3 1 23 684 706 684 706 0.93 6 11 2.6e-05 0.0028 18.9 0.0 1 23 712 734 712 734 0.97 7 11 1e-05 0.0011 20.2 0.5 1 23 740 763 740 763 0.95 8 11 0.0017 0.18 13.1 2.2 1 23 769 792 769 792 0.93 9 11 0.00016 0.017 16.4 0.5 2 23 799 820 798 820 0.97 10 11 1.2e-05 0.0013 19.9 1.1 1 23 826 848 826 848 0.97 11 11 0.0023 0.24 12.8 0.2 1 23 854 878 854 878 0.94
Sequence Information
- Coding Sequence
- ATGCACggCCTAAAAAATACCTGCTTTATATGCAATGTATCCGCCTACGTGTCTACAAGGGTGGGAGTAGATTTATTTAAAGAGGAGaaattattaaaatctgGTAAGAAGTTGCGAGAAGTGGTCAGTGAGATTCTAGACAAGCCTGTGATACAGAATGGTATCCTTGCGGAGGTGCTGTGTGTTAAATGCCACAAGATTATCGTCGAATATGATTGCCTGTTGCACAGATGTCATACAATTCAAGCGGAATTGTTGGAAAATTTCAAAAAGACGCTTTCGAAGTTCGATTTAGACTATGAAACTTACAATTCGGCACTAAAGACACAGATTAAGGAAGATTGTTCGGTTAAAAATTGGAAGGAAGTGAGTGTTTCCTTCAATGGAAGTAGGGGAGCAATTTCTACCCAGGAAAGAAGGGAATCAGGTATTTCTATCCCAGGAAATAAAAAAGCACCTGTTTCTAACGAAGGAAACAGGGAAACAGCTGTTACTAACGAAGGAAGCAGGGAAACAGCTGTTTCTAACCAGGGAAACAAGGAAACAAGTGTATTCATCCAAGGAAGCAAAGTAACCTGCGCGATAAAGAAAGAACCGTTTGATACAAAGACGATTGTTCTGTCCGCATCTAAATTGCAGCCCTTGCCATCTAACTTCGTCCTAAAGTCAGGATCGTTTCCGGTGCCCAGGTCTAATTTAAGTGttataactaaattaaaaCAGATCTCAACCCAACCTTTAAGTCCAAGTATCAGCCCTGCTAAGCCGTTCCAAAGCAAAATGAGTATTGATCAGAAATTGATCCCATACAAGATGATGGATATAAAGAAGGATCTATTGAAACAGAATCCAGTGAAAGTATCCAAAGCAGAAACTAGTACGGCAAGATCTGAACTGTCATCGCTGTTGAAGTTTGGTCAAACCCCATCGAAGGATTCAGTGTATACCTTGAACATGACAACCATATCAAAGGAATTCCTGTCCGCCGCCATCTTAGGAGAACAAGATATGAAGAATGAGATGAGTTTGAGCGATGGGGAAACGGCTGATGAGAATCCAATGGAAATTGATGAAGGCTGTTCTCTAGCAGTCTTGACACAAAACAAGTTGGAAGATGGACACATATTTGAAAAGATCAATGAACAGGATACAGACAAAGATAATCTGATGAGGCTCGTACCCGCCGAGTTGCAGATCATCGACGGGAAGAACGAGGATGACTCGGAAGGACaCACAATAGTGGTGGATGAGAGCGGTTCTATATTGAGGGTGGTGTCCGGACAGAAGCTGATGATAGGAGACAACGAAATATCCCTGGTCATGCCGGACGACAGTGAGATGGACGCTCTCGATGTTGGAGACAGCCAAGATTCCAATGAGGAATCCCAAATAGAACTGCAAGTGTCCGGAGACGAGGAGACGGCCAACGCTATCATAGCCGCAGCACAGGAACAAGgtgGTGCATTCATAAAAGTGGAGTCAGGAGAGATGTTCAGAGTGGAGTCGGTGCAGAGTAAAGAAGAGAGTGAAGACGAGATGGAGTTTGATTTCCAAGTGGAGAAGAAAGAGGACGGTATATTTCGGTGTCTCTTCTGCGAGAAATATTCGAACGCGGAGCTGGTGTTCGAGGGCGACGCGTCATCCATGATGCAACACCTAAAGGCGGCGCACGACGCGCGCCTCTACATATGCACCGTGTGCGGCAAGTTCGTGCGTAAGAAGTCCGATTACGTCAAACATCTGTCGGAACATGCTGACAGCGACTACAGCTTGAATGTGGACAAGAGTAAACTACATGAGTGTAACGTGTGCCAAAAGAAGTTCAGTTCTCGCGTCCTCCTCTCCGAGCACGCAAACGCTCATGCGGGCGCGCGACCGTACCAATGTACCGTGTGTCAAAAGACCTTCGCCTCCAAGTATACCTTCGCATCGCACGCCATGACGCACACGGACCGGCCTAGGCCCTACAAGTGCTCCCAGTGCAGCAAGTCGTTCTTTACTCAGCAGAATCTCTCGCAGCATCTGAAAACCCACTCGGGCATCAAGGATTTTGTTTGCAAGATATGTAACAAGGCGTTCGGCACCCAACACAACCTGGAGGTACACGGCGTGGTCCACTCGCGCAAGAAACCCTTCGCCTGCACCGCCTGCGGGAAGGCCTTCGCCCGCCGCGCCGAGCTCAGAGACCATGCGCGCATACACACCGGCGAGCGGCCGTTCGCGTGTGAAGTGTGCGGCGCGCGGTTCACTCAGCGCTCCAACTTGTACTCGCACCGTCGCGCCACGCACATGAACGACAAACGACACGCCTGCGACCGCTGCCCCAAGCGGTTCAAGCGCCGCAGACTGCTGGACTACCACATAAAGGCGTCCCACACGGGCGAGCGGCCGCTATCGTGTGAGATCTGTGGAGACACCTTCGTCTACCCCGAACACTACAAGAAGCACGTGCGCATACACAGCGGCGAGAAACCCTATGTCTGCGAGATATGCGGCAAGACGTTCAACTCGCGCGACAACCGCAACACTCACCGGTTCGTGCACAGCGACCGCAAGCCGTACGAGTGCCTCGTGTGCGGCGCCGGCTACATGCGCAAACGGCTGCTCTACCAGCACATGAACACGCAGGGTCACATGGCGGAGTCTATCGTGGTGAACCAGCCGCGCATCTCAGACCCCAATGAGATATTTGAACCGAGTGAAGAGATGACTACAGATACAGCTGAGATGTTAGGGAAGACCATCGACATGTCACAAGACGGGGAAGCTACTGTTTTGACTATACATAACATCGACGGCGAGCTGAAGACGGACGTGGACATCCTGGAGACGGTGACGGTGGATCAGCTGGAGCAAGCGcagGTGGTAAGCGACGGCGGTGTGATGAGGTTGGTACAGTTCCAGCTTCCTGGTGGTAACTGTGGGTGGGTCGCCGTCGAGTGA
- Protein Sequence
- MHGLKNTCFICNVSAYVSTRVGVDLFKEEKLLKSGKKLREVVSEILDKPVIQNGILAEVLCVKCHKIIVEYDCLLHRCHTIQAELLENFKKTLSKFDLDYETYNSALKTQIKEDCSVKNWKEVSVSFNGSRGAISTQERRESGISIPGNKKAPVSNEGNRETAVTNEGSRETAVSNQGNKETSVFIQGSKVTCAIKKEPFDTKTIVLSASKLQPLPSNFVLKSGSFPVPRSNLSVITKLKQISTQPLSPSISPAKPFQSKMSIDQKLIPYKMMDIKKDLLKQNPVKVSKAETSTARSELSSLLKFGQTPSKDSVYTLNMTTISKEFLSAAILGEQDMKNEMSLSDGETADENPMEIDEGCSLAVLTQNKLEDGHIFEKINEQDTDKDNLMRLVPAELQIIDGKNEDDSEGHTIVVDESGSILRVVSGQKLMIGDNEISLVMPDDSEMDALDVGDSQDSNEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVESVQSKEESEDEMEFDFQVEKKEDGIFRCLFCEKYSNAELVFEGDASSMMQHLKAAHDARLYICTVCGKFVRKKSDYVKHLSEHADSDYSLNVDKSKLHECNVCQKKFSSRVLLSEHANAHAGARPYQCTVCQKTFASKYTFASHAMTHTDRPRPYKCSQCSKSFFTQQNLSQHLKTHSGIKDFVCKICNKAFGTQHNLEVHGVVHSRKKPFACTACGKAFARRAELRDHARIHTGERPFACEVCGARFTQRSNLYSHRRATHMNDKRHACDRCPKRFKRRRLLDYHIKASHTGERPLSCEICGDTFVYPEHYKKHVRIHSGEKPYVCEICGKTFNSRDNRNTHRFVHSDRKPYECLVCGAGYMRKRLLYQHMNTQGHMAESIVVNQPRISDPNEIFEPSEEMTTDTAEMLGKTIDMSQDGEATVLTIHNIDGELKTDVDILETVTVDQLEQAQVVSDGGVMRLVQFQLPGGNCGWVAVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -