Hhel008076.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971418.1:22485163-22511605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.018 2 9.9 3.8 2 23 84 105 83 105 0.95 2 15 0.57 60 5.2 0.2 1 23 117 141 117 141 0.89 3 15 8.9e-05 0.0094 17.2 0.2 2 23 148 171 147 171 0.96 4 15 0.036 3.8 9.0 0.2 1 23 177 199 177 199 0.93 5 15 0.0011 0.12 13.7 3.3 1 23 205 227 205 227 0.98 6 15 0.37 40 5.8 0.0 2 20 238 256 237 258 0.89 7 15 0.013 1.4 10.4 0.2 1 23 335 357 335 357 0.98 8 15 1.1 1.1e+02 4.4 7.2 1 23 364 386 364 386 0.95 9 15 0.00072 0.076 14.4 1.8 1 23 420 443 420 443 0.95 10 15 0.0081 0.86 11.0 3.5 1 23 450 473 450 473 0.97 11 15 0.0098 1 10.8 0.1 2 23 493 515 492 515 0.95 12 15 0.00018 0.019 16.3 0.2 2 23 535 557 535 557 0.95 13 15 0.00022 0.024 16.0 0.0 1 23 572 594 572 594 0.98 14 15 0.00011 0.012 16.9 0.1 1 23 600 622 600 622 0.97 15 15 2.6e-05 0.0028 18.9 0.5 3 23 630 651 628 651 0.95
Sequence Information
- Coding Sequence
- ATGCTGATTATTGATATTCTATTTAAAGGCACTAAAGACACCCAGGAGTCTGAAGACAACGCGAATGAATCGGTCAAATTACCGCCGATATTCATCACGGAGGTTAAACAAGAATGCCTAGGTAGCAGCGACGAAGAAGCCATATGGATCGTTCAGGCAGAGGACGAGTGCACAGAGCAGTTGCAACAGGAACAGGGGAAGAAACTACGCAAAAAGAGAAGCAAAGGCTCCAGTAACTCCCTCATAGTAACGTGCCATAACTGCAATGAATCTTTCACCTCTAAAGTCAGATTAAAATTTCACATGCAGTTCCACGAGACTAGCAGCATGCTGACGGCGGAGGGCGAGTACGTCTGCCCGGAGTGTGAGGGCGCTACCTTCCCCACCGAGACGGCGCTCTTCGACCACGTACACTTCCAGCACGACAAGCAGAAGCGCTGGCAGTGCCCCGTCGAGGACTGCGGGAAGACCTTCTTCTTGAGAGCGACCCTGACGAAGCACAGTCGCATCCACACAGACACCCGGCGCTACGTGTGCGTTACCTGCGGCAAGAGGTTCCTCGACAAACAGACGCTGGACGAGCACGGGGTCACGCATCTACAGATCAAACCGTTCCAATGTCACATCTGCCTGAAGCAACTGACGCGACGCTCCCGGCTGCGGATGCACTTGCGGGCCCACGAGGAGGAGTTGTCCCTGAAACTGGTGCTGGTGTGCGCTGTCTGCAGCAGAGCCTTCAGAGACCACGTCGATGCCCAGGAGCACGTAGCGAAATCGAGCGAATGCTTAGAGGTGTTCACCAGCGGACTGAAGGAAGACACGGAGACGGAGCGGCTGTCGCCCACCACCGGGATTGTCACGCCCAAGGACGTGGACAAGAAGTCGTCGGTGCTGGGCGCGCCGATCGAGCGCGAGGTGCGGTCCGTCGAGAGCGCGGCGCTGCTGGCGGGCGTGGCGGACGGCGCGCGCTCCGTGCTGCGTGTCGTCAACATCGAGAAGGCCTTCCGCTGCGAGTACTGCGAGGACGTGTTCTACCTGGAGGAGGCGCTGAACAAGCACCGGATCATTCACAAGGGCGTGAAGAACCCGTTCACGTGCCACATCTGTAAAGTCAGCTTCGCCACCTACTCCAGATGCACCACCCATAAGACGACGCACGGGTTCTACAAGCGGACGACGGAGGCGCCGGGCGGGGAGACACGCGGGCCGGCCAACGCGGGCATCCTCGGCTACGGCGGCTTCCCCGTCGTCAAACACTTCTTGTGCGAGGACTGCGGGCGGTCGTACCTGCACTGGACGTACCTGCAGGTGCACCGGCGGATGAAGCACGCCAACGAGCGGTACCTGTTCCGCTGCGACCACTGTCAGCTCACCTTCAACAACAGTTGGAGTATCGCCTATCACAGAAAGAAAACTCACGGTAAAAGCGGCAGCGATGAAGGCGTTACTAAAATCATCAGGGAGGACTTCAAGATTCCTTGTCGCGACTGCGAGGAGGTGTTGCCGAACAAGACTGCGCTGTACAAACACAGGCAGAAGGAGCACTGCGGAGGACCAGGGAACGAAGATTATATCTCCGAGTATAAAGAAGAAGACACAGCGACTTGCGCCAAGTGTGGACTCGACTTCCGTACGTCTGTGGCGTTACAGAAACATCTCAAAGAGGTCCACGGAGTTGAGGGAGCTGTGGGGGCTGAGGAGGCGAAGGGCCAGTTTCCGTGTGAGGGCTGCGGGCGGGCGTTCCGTTCAGCGGGCGCGCGGGCGGAGCACGTGCGCGTGCACACGGGCGAGCGGCCCTTCCCCTGCGACCTGTGTGGCGCTGCCTTCCGCAGATCGACGGCGATGCGCAACCACCGCCTGATCCACGGGGGAGCGCGCGCGTGGGCGTGTCCGCGCTGTCCGCGGCGGTTCCGCGTGCGCTCCGACTTGCGGACGCACCTGCGGCTCAAGCACCCCGCACACCTCGCCGTTATAGAGATCGAAGGTCTGAACCCCACGCCCGAGGAGGTGCTCAGCTACCTGAAGAGGAACAACATAAATCCGGACAAGGTCCTGGAGATCACTATGATTTCATTTCCGAAGGGAACCACAAACATAGTACCAAACTCAGCGCGAGCGCTGTCGATGTTGAGCGACGTACGCAGGACGCAAATCGCGTGCGAGAATACGCCCTCTCAGCCGCTCGACGTTTTCCAACGCGCGAAGGGAAGCAGACCCAGTATACTTCAGCGAGGCACGGATATGGCACAAGACTATTTCCCGATAACTTTGAACGATTCGGAACGCTTATCAGCATTGAACGTGGAGTTGCTGTTGCCTGAAGGCGGACTCGTCAACGGCAACCAGATGGTTCAGTTGCAGCTGGACGATGGAATTGGCTTGGAATAA
- Protein Sequence
- MLIIDILFKGTKDTQESEDNANESVKLPPIFITEVKQECLGSSDEEAIWIVQAEDECTEQLQQEQGKKLRKKRSKGSSNSLIVTCHNCNESFTSKVRLKFHMQFHETSSMLTAEGEYVCPECEGATFPTETALFDHVHFQHDKQKRWQCPVEDCGKTFFLRATLTKHSRIHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELSLKLVLVCAVCSRAFRDHVDAQEHVAKSSECLEVFTSGLKEDTETERLSPTTGIVTPKDVDKKSSVLGAPIEREVRSVESAALLAGVADGARSVLRVVNIEKAFRCEYCEDVFYLEEALNKHRIIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRTTEAPGGETRGPANAGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANERYLFRCDHCQLTFNNSWSIAYHRKKTHGKSGSDEGVTKIIREDFKIPCRDCEEVLPNKTALYKHRQKEHCGGPGNEDYISEYKEEDTATCAKCGLDFRTSVALQKHLKEVHGVEGAVGAEEAKGQFPCEGCGRAFRSAGARAEHVRVHTGERPFPCDLCGAAFRRSTAMRNHRLIHGGARAWACPRCPRRFRVRSDLRTHLRLKHPAHLAVIEIEGLNPTPEEVLSYLKRNNINPDKVLEITMISFPKGTTNIVPNSARALSMLSDVRRTQIACENTPSQPLDVFQRAKGSRPSILQRGTDMAQDYFPITLNDSERLSALNVELLLPEGGLVNGNQMVQLQLDDGIGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -