Hhel027015.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971434.1:16974039-16982052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0039 0.42 12.0 0.0 1 23 177 199 177 199 0.98 2 11 0.008 0.85 11.1 0.3 1 23 206 228 206 228 0.98 3 11 0.037 3.9 9.0 0.0 1 23 232 255 232 255 0.95 4 11 3.2e-06 0.00033 21.8 0.8 1 23 260 283 260 283 0.95 5 11 0.0067 0.71 11.3 1.4 1 23 289 311 289 311 0.97 6 11 1e-07 1.1e-05 26.4 2.1 2 23 324 345 323 345 0.97 7 11 8.1e-06 0.00085 20.5 2.6 2 23 364 386 363 386 0.96 8 11 0.15 16 7.1 0.6 1 23 393 416 393 416 0.95 9 11 0.0054 0.58 11.6 0.2 6 23 427 445 426 445 0.97 10 11 0.00012 0.012 16.8 0.2 2 23 455 476 454 476 0.96 11 11 2.6e-06 0.00027 22.0 1.2 1 23 481 504 481 504 0.97
Sequence Information
- Coding Sequence
- ATGATGGCTgcaatagaagtgaaaaaagAACCTTTGGAAGGACCTGTTTATGATCAGGAAGAACCGCAAACTAATTTCACTGATAATTTTGTGaacataaaatctgaaattccTGAAATTATTCAGATTAAAGCCGAACCAAGAGAGATACTAGAAGATACttctgataatgataataatgaagaaGAAAACTATGatagaataacaactattaaaATAGAACCAATTCACGAGAGTGATGAAGAAGAGACCTGCATGCCTGCCTCTCCACCTAAACAAAAGAGTAAAGGGGAGAGTAGAAGGCGAAAGGAGTCATCTGATGAGGAATACATTTTACCACAAAACACCAAGAAAAAAGCCTTGAAAAAGGGGAGCAATGTGAAACCCGGTTTTAAGGGAAAATCAAAgaACAATCCGGACATGATATACGGCGAGGAGATCACCCGTCACGTGGAGATAGTGACGATCAGCGAGGATGAGCGACGCTCAGAGCACGCGGAGGTGCTGGCGTCGCGCAGACACATGCGCTTCGTGTGCGAGGGCTGCGCGCTCGGGTTCGTCGTCGAAGACGCGTACAAGGACCACATGAAGATGCACGACCCGaaaaacggtGATTTCGAATGTGAGGTGTGCGGCACGCGTCTCAAGAGCGGCGACGTACTGTACCGTCACCGGCTGCGGCACTACCGGCGCTACCGCTGCGCGCTGTGCGGCCTGCGCCTGCGGGACAAGGATACGGCCGCCGCGCACGTCATGAACGTGCACCAGGGGACCTCCTTCACGTGCGCGCAGTGCGACAAGGGCTTCAAACGTCCTCAGTACCTAAAGCGGCACATCGAGCAGATGCACACGCGCGCCGTCAAATACGAGTGTCCCGTGTGCCAGCGCGTGTTCTACGAGCGAGGCTGGTACCGCTGCCACGTCAGGTCTCACAATGAGGAGGTGCAGCGCAGTGCGGCGCAGCGCACGCCTTGTCCACAGTGCGGCCGCCAGTTCAAGAGCCGCTCGCACTTGGCGCGACACCTGCGCACGCATGATGACGACTACGAGCCCGAGGAAGTGTACAAGCCGCTGAACCCGTGCGACACGGAGTGCTCGCACTGCGGCCGCGTGTGCGCCACGCCCAGCATGCTGCAACGGCACTTGCAGCGCATGCACGCCGACCGCACCAAGAGGTTCGAGTGCGGTCATTGCGCGCGGCGCTACCTGACGAAGGGCGAGGTGCGCTCGCACATCATGTGGTCGCACATGCGGCGGCGAGGCGGGCACGTGTGCGCGTGCGGCCGCGTGTTCCGCTCGCCCGCGCGCCTGCGCCAGCACCGCCTGCGGCAGCACCTTCGCCTCACCGAGCCTAAGGACAAGCCCTGCCCCATCTGCCAGAAGTTGTTCGCGAACCAGCAAGTCCTCACTCGTCACATCAAGGGCCACAGCGGGGAGACATACCCGTGCACAGAGTGTGGACAGACATTCAAGACGCAGTCCTACGTCAAGGTGCACTACAAGATCAAACACCTCAATATGACCCGGGCCCAGGTGAAAGCGGAGAGCAAACGGAAGCTCCTCATGGTGGAAAATCTGGACGAGTTCATGAACGCCAGAGTACGTAGGGAGGGCCAGGACAAAAAGATAGACCCCCTGTACTTCCCCAAGGATATCAAGATCAAGGAAGAGAACCTAAGTGATATAGAAGTGCCAAAGTTTGAGATGTTCATAGGTGTACCTCGGTAA
- Protein Sequence
- MMAAIEVKKEPLEGPVYDQEEPQTNFTDNFVNIKSEIPEIIQIKAEPREILEDTSDNDNNEEENYDRITTIKIEPIHESDEEETCMPASPPKQKSKGESRRRKESSDEEYILPQNTKKKALKKGSNVKPGFKGKSKNNPDMIYGEEITRHVEIVTISEDERRSEHAEVLASRRHMRFVCEGCALGFVVEDAYKDHMKMHDPKNGDFECEVCGTRLKSGDVLYRHRLRHYRRYRCALCGLRLRDKDTAAAHVMNVHQGTSFTCAQCDKGFKRPQYLKRHIEQMHTRAVKYECPVCQRVFYERGWYRCHVRSHNEEVQRSAAQRTPCPQCGRQFKSRSHLARHLRTHDDDYEPEEVYKPLNPCDTECSHCGRVCATPSMLQRHLQRMHADRTKRFECGHCARRYLTKGEVRSHIMWSHMRRRGGHVCACGRVFRSPARLRQHRLRQHLRLTEPKDKPCPICQKLFANQQVLTRHIKGHSGETYPCTECGQTFKTQSYVKVHYKIKHLNMTRAQVKAESKRKLLMVENLDEFMNARVRREGQDKKIDPLYFPKDIKIKEENLSDIEVPKFEMFIGVPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00925987;
- 90% Identity
- iTF_00925987;
- 80% Identity
- -