Hhel026290.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- B0310.2
- Assembly
- GCA_963853865.1
- Location
- OY971434.1:1950300-1975719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 7.2 7.6e+02 1.8 1.0 1 23 359 381 359 381 0.86 2 21 0.0043 0.45 11.9 0.8 1 23 388 411 388 411 0.93 3 21 0.86 91 4.7 0.2 1 23 415 437 415 437 0.91 4 21 0.031 3.3 9.2 0.8 1 23 442 465 442 465 0.97 5 21 0.0063 0.66 11.4 0.6 1 23 469 492 469 492 0.95 6 21 5.1 5.4e+02 2.2 0.1 3 21 506 524 505 525 0.85 7 21 0.18 19 6.8 0.2 2 23 579 601 578 601 0.96 8 21 0.017 1.8 10.0 0.5 2 20 617 635 616 638 0.92 9 21 1e-05 0.0011 20.2 2.5 1 23 644 666 644 666 0.99 10 21 0.00011 0.011 17.0 2.4 1 23 673 695 673 695 0.98 11 21 0.0002 0.021 16.1 2.2 1 23 701 724 701 724 0.93 12 21 0.0068 0.72 11.3 1.6 1 23 943 965 943 965 0.98 13 21 0.17 19 6.8 0.1 1 22 972 993 972 995 0.88 14 21 0.0021 0.22 12.9 1.8 1 23 1026 1049 1026 1049 0.95 15 21 0.0057 0.6 11.5 0.4 2 23 1054 1076 1053 1076 0.94 16 21 0.079 8.3 7.9 0.3 3 22 1093 1112 1092 1116 0.93 17 21 0.00028 0.029 15.7 0.1 3 23 1163 1184 1161 1184 0.96 18 21 4.6e-05 0.0048 18.1 1.9 2 23 1194 1215 1193 1215 0.97 19 21 0.016 1.7 10.1 0.0 6 23 1225 1242 1224 1242 0.99 20 21 2e-05 0.0022 19.2 1.7 1 23 1248 1270 1248 1270 0.98 21 21 0.00014 0.014 16.6 1.3 1 23 1276 1299 1276 1299 0.96
Sequence Information
- Coding Sequence
- ATGAGGTGTTGCGTAAATAATTGTACAAATGATACGAAAAAGACCACTAAAATCCATGGAATTACCTTTCATATGTTTCCAAAAGAACAAAGTTTAAGAAATACATGGATAGAAGCACTGGGCATACATGATTGGGAGCCAAAAGACCGCAGtacAATATGCTCTGAACATTTTAAACAGGATgcattttatgaaacaaaaagtGGCTTGAGAAGGATAAGGAATGGAGCAGTCCCAATGCTAGCTGTTaaATCAACTGAGGAGTTAGAAGCTCCTGCAGCATTAAGGGTATGCAGAATGTGCTTAGCAATAGATGTCAAAATGCATCACATAACGGATTTCAAGCTAAGTCATCTTTATGAGGATGTCACAGGAATAATACTGAATCCAGAAGACAGACTTCCAAAGATGGTTTGCTGGGAGTGTGCCGGAAGGCTTACGTCAGCCAAGAGATTCAAAGACAAAGCACTCAGATGCTATAGCTTGTTGGTAAACAAAGTGAATACAGaaaactatATGACCATAAAAGATGTGAAAGTGATAAACAGATCTCAGCACAGACTTCAGTCTAACCTCATCATGAAATGTTTTGGCAACGACGATTGCGACCTGATGATACGCGATGATGAAATCATTAAGGCTGAGAAGGAAGTGGAATATGATGACAATTTCAGCGATGACAATATTGACAACACCGATGACATGGTACCAGATGTGATGTTACAGGTTAAAGATGAGAAGATATTTGTAGAAGAGTACCCTGGGTTTGTGAGTGAGGACGATAAAAGTTTAAGGGAAATATACAAAGAGAAGAAGGTGAAGAAGAGAAAGTGTAAAGTGAAAAGTGACAAAGCGAAGGAAGTGTCAGTGAAAGACGTGCAAGTTAAAGTTAGTCTCACTGATGACGACACCCCGTCAACTACAATGGATAGATACAAAAACTCGTCCGTCCGCCGGCGCAAGACGAACGACGCGCTGGACGAGAGCCTGTTCACGATCACGGCGCTGACGTACGACGAGCAGATCGCCGAGGTGCAGGCGCGCCAGGCCTCCGCGGCCTACCGCGCCGCGCCGTACAAGTGCGCCGTGTGCTACCGCGGCTTCCACATCCGCGACCGCTACGATGCGCACGTGGTGCGGCACAGCGAGCAATCGGGCGCGTACGAGTGTTTCATCTGTAAGACGCGTCTAAAGACGGCGAGGGCGCTGCGCAAGCATCTCACTGCGCAGCACACTGAGAAGTACAGCTGCAAGGGCTGCCCCTTTGCCACCAGGAACAGAGGCGTCGCCAGAGAGCACGAGAAGTGGCACGCGGGGACCAAATACCAGTGTCCGCACTGCCCCAGTGAGTTCGATAAGGTGACGACGTACCTGGGCCACATCCGCATCAAGCACGTGTCGTCGTTCGTGTGCGAGCTGTGCGGGTACACCTTCATCAGTCAGAAGGGCATCGACGTGCACAAGAAGAAGAAGCACCGTCTCGCCGACAAGAACCTACCGCTGGAGGGCCCGTACTGCGCGGAGTGCGACGTGCGCTTCGTGTCGGAGGAGGCGCACGCCCGCCACCTGAAACTGTCCTCGAGGCACAGCAGCGACGACGACCCTAACCGAATAAGGAACGACTCTCAGAGCATGAACACGGAGCGGAACGGACGGGTCATGCGGCGCATCGACCGGCGGCCCGTCGTGCACGCGCGCGCGCTCGACCTGCCCGTCGACGGACACGGGCCCGTCACCTGCGAGCAGTGCGGCATCCAACTGCGGGACCTGCGGTTGTACGCGCAGCACTTCCGGCGTGCGCACCCTGATAAGAACCGCACCAAGTATCCCGCCATGAAGTCACCTTGTATGTGCGAGCAGTGCGGCAGGATCTTCCAGAGCATGGCGCTGCTGAAGGACCACATGTGGGTGCACACGGGCGAGAAGCGGTTCAAGTGCGACCGCTGTGACAAGAGCTTCACGCAAAAGACCAACCTGGTGTTCCACATGCGCGTGCACAGCGCCTCGCGCCCCTCCTACGAGTGCCCCGTGTGCGGCAAACACTTCGCCTTCTACAACAACCGCCGGCGCCATATGTTTATCCACACGGGCCTGAAGCCGTTCAAATGTGAGACGTGCGGCAAGTGTTTCACGACAGCGGGCGAGCAGCGTGCGCACGTGGAGCACGTGCACCTCAAAAAGCCCTGGCCAAAACGAGCGCGAGCGCGAGCGCCGCAGGGCTGGCCTGGACCGGAAGTGAATAGGCGaactatagatattataaatacacatttGCAACAGGTTTATGAAAAAATAGCGGGATTTAAGATTCAACATGCTTTCCTCTGTCTCTGCTACATCTGCCACAAGCGGTTACAACAATGCCAGCAACTCTGGAGGCTGGCTGAAGAAGCACAAAGTTGGTTGAAAAATTTCCAGGAAGATAGCCATAAGtctgACAGCAAATTGAAAACACAAACATCTTTGATAGAGTTGTCAACAGCCAATGTATTGAATGTATCAATATTGTCTGATGGTGATGAGATCAAACAAGAGGCAGGTGTCAAGGAGGAGGATGTAGAtgATATAGAACACATAGGTATAGAAAATATTGATGAATTTGAGAAAAACGAGGAGTCCATCAAGAGTTCTGATTCAGAAGACGATGTGCCCCTCAACAGTATCAGAATGAAACAGGAGTTTGACGCAGAGAGAAATAAGACTGAAGTAGATACTAAAGAGAATAAAGATATAAAGTTGGAAGCGCTGGAGATAACCCTGAGCCAGGAGGAGCAGATGCGCGAGTTCCTTCAGCGAGCCACCAGCGCCAACTACGCGTGCTCGCCGTACAAGTGCAGCCTGTGTTACCGCGGGTTCGTCCACCCCGCCGCCTACGACAAACACCGAGAGAAGCACGATGAGCGCGCGGGCGCGCACGCGTGCGGCGTCTGCCAGCTGCGGTACGGCAGCGCGCGCCAGCTGCGGGCGCACGCCGCCGCCGCGCACGCGCGCCGCTACGCCTGCCCGCGCTGCCCGCACCGCGCGCACACCAGGAACCAGGCGAAGGAGCACGAGAAATGGCACCGCGGACACACGTACCTGTGTAATCTGTGCGGCGTCAAGTTCTCCAAGCCGACGACTTACCTGACGCACCGGCGCAAGCGGCACGCCGGCGCCAGTACGTGCGCGCGCTGCGGGGAGGGGTTCGCCACGCCGCACGGCCTGCGCCTGCACACCACCAAGGCGCACGGCCGCCGCCCGCCCACAGAAGCCGTAGAGCCGTCTGCGGAGAACCTGTGCAAGCAGTGCGGCATCCAGTTCGACAACACCACGGCGTGGAGGAGGCACGTGCTCACCTCCGACAGACACACCGTCTGGAACGAACACAACGACGAGTGCGCGGTGTGCGGGGAGGCGGTGGGCGGGGCCGAGCGGCGGCGGCACGAGCGGGCGCACGCGCGCGAGCTCGGCCGCACCGGCGCTCCGGGCCCGCCGCTGCAGCTGGCCTGCGAACAGTGCGGCGCGTACGCGACGTCCAAGTCGAACCTGCGCGCGCACATACGGCGCGTGCACCTCGGCCTCAAGTACGACAAGCAGCTCGTGTGCGAGGTCTGCGGCAAGAACTGCACCTCGAACGCCACGCTGCGCTACCACCAGCGGCGCCACACGGGCGAGCGGCCGTACGGCTGCGCGTGCGGCGCGCGCTTCGCCGACGCCAATCAGCTGCGCATCCACGCGCGCACGCACTCCGGCGAGCGGCCCTACGCCTGCCACCTGTGCCAGCGCCGCTTCGCGCAGAAGCCCGCGCTCAACAAGCACTACCGGGTTCACACGGGAGCTAAACCGTACGAGTGTCAGTTCTGCAAACGAAGCTTCAGCCAGACCAACTCGTTGAAGCTGCATGTGAGAGCGGTTCACTTGAAACTACCCCCAAACAATAGGAAGAAAAATTTacctgaaaaaattaaaaaagataatgttgAAGCAATAAATGAATAG
- Protein Sequence
- MRCCVNNCTNDTKKTTKIHGITFHMFPKEQSLRNTWIEALGIHDWEPKDRSTICSEHFKQDAFYETKSGLRRIRNGAVPMLAVKSTEELEAPAALRVCRMCLAIDVKMHHITDFKLSHLYEDVTGIILNPEDRLPKMVCWECAGRLTSAKRFKDKALRCYSLLVNKVNTENYMTIKDVKVINRSQHRLQSNLIMKCFGNDDCDLMIRDDEIIKAEKEVEYDDNFSDDNIDNTDDMVPDVMLQVKDEKIFVEEYPGFVSEDDKSLREIYKEKKVKKRKCKVKSDKAKEVSVKDVQVKVSLTDDDTPSTTMDRYKNSSVRRRKTNDALDESLFTITALTYDEQIAEVQARQASAAYRAAPYKCAVCYRGFHIRDRYDAHVVRHSEQSGAYECFICKTRLKTARALRKHLTAQHTEKYSCKGCPFATRNRGVAREHEKWHAGTKYQCPHCPSEFDKVTTYLGHIRIKHVSSFVCELCGYTFISQKGIDVHKKKKHRLADKNLPLEGPYCAECDVRFVSEEAHARHLKLSSRHSSDDDPNRIRNDSQSMNTERNGRVMRRIDRRPVVHARALDLPVDGHGPVTCEQCGIQLRDLRLYAQHFRRAHPDKNRTKYPAMKSPCMCEQCGRIFQSMALLKDHMWVHTGEKRFKCDRCDKSFTQKTNLVFHMRVHSASRPSYECPVCGKHFAFYNNRRRHMFIHTGLKPFKCETCGKCFTTAGEQRAHVEHVHLKKPWPKRARARAPQGWPGPEVNRRTIDIINTHLQQVYEKIAGFKIQHAFLCLCYICHKRLQQCQQLWRLAEEAQSWLKNFQEDSHKSDSKLKTQTSLIELSTANVLNVSILSDGDEIKQEAGVKEEDVDDIEHIGIENIDEFEKNEESIKSSDSEDDVPLNSIRMKQEFDAERNKTEVDTKENKDIKLEALEITLSQEEQMREFLQRATSANYACSPYKCSLCYRGFVHPAAYDKHREKHDERAGAHACGVCQLRYGSARQLRAHAAAAHARRYACPRCPHRAHTRNQAKEHEKWHRGHTYLCNLCGVKFSKPTTYLTHRRKRHAGASTCARCGEGFATPHGLRLHTTKAHGRRPPTEAVEPSAENLCKQCGIQFDNTTAWRRHVLTSDRHTVWNEHNDECAVCGEAVGGAERRRHERAHARELGRTGAPGPPLQLACEQCGAYATSKSNLRAHIRRVHLGLKYDKQLVCEVCGKNCTSNATLRYHQRRHTGERPYGCACGARFADANQLRIHARTHSGERPYACHLCQRRFAQKPALNKHYRVHTGAKPYECQFCKRSFSQTNSLKLHVRAVHLKLPPNNRKKNLPEKIKKDNVEAINE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786855;
- 90% Identity
- iTF_00786855;
- 80% Identity
- iTF_00786855;