Hhel006506.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971417.1:21541325-21554619[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.7e-06 0.00018 22.7 1.1 1 23 139 161 139 161 0.96 2 10 0.016 1.7 10.1 2.6 1 23 166 188 166 188 0.98 3 10 2e-08 2.1e-06 28.7 1.4 1 23 194 216 194 216 0.99 4 10 8.2e-05 0.0087 17.3 0.1 1 21 222 242 222 243 0.96 5 10 2.1e-06 0.00022 22.3 1.5 2 23 256 277 255 277 0.97 6 10 1.5e-05 0.0015 19.7 1.7 1 23 283 305 283 305 0.97 7 10 0.00017 0.018 16.3 2.5 1 23 311 333 311 333 0.98 8 10 1.2e-05 0.0013 19.9 6.7 1 23 339 361 339 361 0.98 9 10 6e-06 0.00064 20.9 0.3 2 23 368 389 367 389 0.97 10 10 2.7e-05 0.0028 18.9 4.4 1 23 395 418 395 418 0.94
Sequence Information
- Coding Sequence
- ATgcttactataaaaatagaacCCGATGATCGTATTTCGGACGGTTCAGAAGAGAATGTAAATGTACATGAAAATGGCGACGTAGCGAACAAGTGTGAAAGTTCTTTAAGTGAAGAAAAAACTACTACAGCTGAATTGAATGTAGAAGCTATTAAAACTGAAGTAGCTATAGAAGCGGTCACaATAAAAGTTGAGCCAAGTGATATTCTTGCTGAAGATAATTGGGAACATCCTCTTGAACCCGAAATTAAGTTAGAAATACCTATTAAACAAGAACTACCTGATCTCAGTGATGATACAGGACCTAAAACATCAACCGAACGTTGTCGAGAATATCGGGAACGTAAACGAAAAAACAAGCCACAGGTAGTATCCGATGAAATCCTGAGCCTTAACTCCTCAATCGATGGTAAATATATGTGTCCGATATGCCATAAAAGATTTGCCAACAAGGGCAACGTACAACGGCATGTTTCGCTCCATAATCGAGAGAAGTTTGAATGCAACGTATGTTTTCGACAATTTCTTAAAAAGGCGCATTTAGATAAACATGTTCTCACGCACTCCGGTgaaaaacattataaatgtgATGAGTGCGGCAAGGCGTTTCGCACCACATCCAACTTGGAGCAACACAAGCGGTCGCACCTCACGGTCAAACCGTTCGAGTGTAACAACTGCGAACGACAGTTTGCCGTGAAAGGGAATTTAGCGAAACATTTAAGAGGCGGCAGGTGCAAAAAAAGGGAGAAACTGGATAAAATTGTGTGCCACGTCTGCGATAAGGTCTTCCCAAAGAAGTTCCTCTTACAAAGTCATTTGAGGCGACACACCACCGAGAAGCCGTTTAAATGCGACATTTGTCAAAtgaatttcaaatataaatccACACTTATCCGACATGAGCAGTTGCACAATGGTATAAAACCTTTTTCGTGTAAAATTTGTCGCAAGTCTTTCACCCACGCGGGCTTAATTAAGCCACACATGAGAAAACATACAGGCGAGAAACCCTACCAGTGTTCCGAgtgtaaaaaatacttttcacaCAAACACAACATGCAGAGACACATGCTGGGACACGCCAAGATAAAACATTTGGTCTGCGATGTATGTAATAAAGTTTTCCCGAAGGAAAGTCGTCTGAAATATCACATGCGTATTCATATGAAGGCAAAACCGTTTTTGTGTAAGATTTGTGGCAAAACGTTTTctcataaacaaaatatcatgAGGCACTACTCCCGGAAACATCCTGGTGAGACGTATGAGTGTACACACACAGACGCGAGTGTAGCTAAGGACGTATGGAACATTGTCCTCCAACAGAAGATGCAAAACAAAGAGATAAAGAGCGAAGTGATCGAAATAGAATAG
- Protein Sequence
- MLTIKIEPDDRISDGSEENVNVHENGDVANKCESSLSEEKTTTAELNVEAIKTEVAIEAVTIKVEPSDILAEDNWEHPLEPEIKLEIPIKQELPDLSDDTGPKTSTERCREYRERKRKNKPQVVSDEILSLNSSIDGKYMCPICHKRFANKGNVQRHVSLHNREKFECNVCFRQFLKKAHLDKHVLTHSGEKHYKCDECGKAFRTTSNLEQHKRSHLTVKPFECNNCERQFAVKGNLAKHLRGGRCKKREKLDKIVCHVCDKVFPKKFLLQSHLRRHTTEKPFKCDICQMNFKYKSTLIRHEQLHNGIKPFSCKICRKSFTHAGLIKPHMRKHTGEKPYQCSECKKYFSHKHNMQRHMLGHAKIKHLVCDVCNKVFPKESRLKYHMRIHMKAKPFLCKICGKTFSHKQNIMRHYSRKHPGETYECTHTDASVAKDVWNIVLQQKMQNKEIKSEVIEIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00925969;
- 90% Identity
- -
- 80% Identity
- -