Hhel015202.2
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971424.1:6397096-6410469[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.017 1.8 10.0 0.6 3 23 614 635 613 635 0.90 2 23 0.042 4.4 8.8 0.6 1 22 1005 1026 1005 1026 0.95 3 23 6.3 6.7e+02 1.9 0.3 1 22 1068 1089 1068 1091 0.82 4 23 0.0041 0.43 12.0 0.4 3 21 1102 1120 1100 1121 0.94 5 23 0.43 46 5.6 0.0 3 23 1130 1151 1128 1151 0.89 6 23 0.01 1.1 10.7 0.2 3 23 1171 1192 1169 1192 0.96 7 23 0.00096 0.1 14.0 2.1 1 23 1198 1221 1198 1221 0.95 8 23 0.12 12 7.4 0.0 1 23 1246 1269 1246 1269 0.90 9 23 0.018 1.9 10.0 3.4 1 23 1274 1296 1274 1296 0.97 10 23 0.53 56 5.3 0.1 1 23 1302 1325 1302 1325 0.95 11 23 0.00054 0.058 14.7 0.9 1 23 1338 1360 1338 1360 0.97 12 23 0.00017 0.018 16.4 1.8 1 23 1409 1432 1409 1432 0.97 13 23 0.0016 0.17 13.3 1.6 1 23 1499 1522 1499 1522 0.96 14 23 0.0019 0.2 13.0 1.5 2 23 1549 1571 1548 1571 0.95 15 23 0.082 8.7 7.9 0.1 2 23 1577 1599 1576 1599 0.93 16 23 0.0079 0.84 11.1 0.2 1 21 1646 1666 1646 1667 0.95 17 23 0.0012 0.12 13.7 0.6 1 23 1677 1699 1677 1699 0.93 18 23 8.3e-05 0.0088 17.3 0.3 2 23 1792 1814 1792 1814 0.93 19 23 1.7e-07 1.8e-05 25.8 1.1 3 23 1821 1841 1820 1841 0.98 20 23 0.011 1.2 10.6 0.0 1 23 1859 1881 1859 1881 0.96 21 23 0.18 19 6.8 0.0 1 23 1902 1924 1902 1924 0.97 22 23 0.01 1.1 10.7 0.5 1 23 1930 1953 1930 1953 0.95 23 23 0.0003 0.031 15.6 0.7 1 23 1961 1984 1961 1984 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGGATTATGATCGTGTTTGTAGACTTTGCTTAGCATCCGAATGCGATTTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCTTGTCCTCGCTTCAAAAATCAAAGATTGTGTCTCCGTTCAGATTGAAGAAAATGACAACCTGCCAAGCAATGTTTGTAAGAAATGTAATGATAATGTCAACAACTGGCACATTTTTAAGGGTGTTTGTGAaagaacacaaaataaattactaaatttaaataataaggaCAGCAACCAACTAGAAGAGttaaaTGTTAAAAGTGAACCTTTATTAGATGAGGCATATGATGACGGAGTAGTCATTGATGGCTCATATCCTGATAGTGAGAATGCAGATTCTTCAAGTAAATTACAACCGGAAGGCCCACCTATTTTGACTTCATTGGGACTTACACCGAGGAGTGATAAGAAATATGTAGATCCCAGAATGGACTGGCAACGAGTCCATACAATATTGGATTTAGTTCAAGATGATGAGGTCATTGACTCTCTACAGATGAGAGAAGAATGTGATGTTGTCCATCTGTCAGAACATGATTCTGATACTGATTTAGAGCTCAATGAAGATGTAAAACAGGAATATCTTGATTTTAAAAAGGGATATGTTtgcagaaataaaaaaaagttgctaTCAAAAAACCCTAAACTGTTATCCTCCCATAACATCGCTAAAGTTAAAAAAGTTCTTAATTTGAGGAAAAAACAAAGTGAATTGCCATTTAAAGATTATAATCTACCAAAGGATGCATGGCAGCAATTTTTTACTGATGACTTGTTAGAGTTGATTGTGTCAGCAACAAACTTGAAGATGGAATCAAACAGTGATAAATATACACCTACAAAGATCCGTGAAATAAAAACGCTTATTGGCATATTATACTATCATGGAGTAATGAGATCAACCCACCAGAAGTGTAGCGACCTTTGGAGTCCTGAGTATGGAGCACCTTGTGTTCAGTTGGCAATGAAATATGACAGATTCAAATGTCTCCTGCAAAATTTAAGCTTTGAAACTAACGAAAGCAACACCATTATGGAGCTTGATACAATGAAACAAATTCGCCAAGTATTTGAAATTTTTGCACTAAATTGTCGAACATCATTTGAAGTGGGCCATAATGTTGTCATTGATGAGGTTATATTACCCGTTCATGGACCTTGTCCGTTCAGATATGAGATAAAAAGAAAACAGTTAAATTCTGGAATTAAACTTGTTTTAGTAGTGGATcccaataatttttatatatcaaattTGGATGTTATAACTGACCCATTCTTTGGAAGTGATGATATTGCTATGAAGTTGTTGCAACATTTAGCTGGATCATATAAAACAGTTATAATGGATAGCTGGTTCACATCAACAAACTTAATATATAGGTTGTACGGAGAGTACAAGCTGTTTACTATAGCAGCATTAAATGAATGCAATGAACTGTTACCACCACTTTTTATATCGCAACACAGAAAGGATAGAAATCTTTTAACTGGATTTCTAGACGAGGATGTTTTACTAATGTCTCTTATTGATTCAGATCTGAAAACCGTCAACATATTGACAAATGAACCAACACATTACAAAAAGAGTAATGGTATGGACAGTGATAAGGACGAAAATGAGGCTGATGAGCCCGATGAGCCCGATGAGCCCGAAGAAGACGACGATGAAGAAGAAATGAGTGCGCATAAAGGTTATGGCGACATACCTAACATGCCGGAAGTATCCATAACGGTGATGCGGCCTTCCGGTGAGACCTTACATTCGAGGCAGGGCATTCAGCAACTAGCGTCCAAGGATTGCTTAGTATGTGGCCGAAGTTACAGGTACTCACATAACGCTAGACGACATGAACTGGGTGCACACAACTTTGATAGGTACACAAATAATGTCTCAGCAAAGAAATTGAACCTGCAACCCAAGCTAAGGCCGAACCCATTCAATCCAAAGGCAAGACTCATGCCCAATCCTATTAGTCATAAAATGCAATACATGGGAAAACCGTTACAACCAAAAATAATACCACAGAAGATCATCGCGTGTCCTAAACCGATACCGATTAAAAACGCGAAACCCAACCATAATAATTTACCTTATCCTCTAAGGATTAAAGCTTTAAAAGATTtgcaaataaagaaaaaagaaccTCAAATACTCAAAACGCTTCTCACATCAAAACCTGAAGTTTTAGTTTCGGAACCTGAAATTCACAACTCTGGTCCGGAAAGCCCAGAAACGTTGATTTCCGAGCCAGAAATAGCATCGTTTGCTGTCGAAACAATTCTGTCTGAACCGGATGGTTTTGTCCATCAGccggacgatgatgatgactgtGACGAGCAAAACAATCGCGGCCATAATTATGGTACAGTCGATATGGAGTCTGACAACGAAATAGAAATAGCTCGTCAACAACAAGACGAAAATTATCAAAATGACAATGATCagaatgatgataatattaaggATGAGTACAACGAAAATGATAAAAAGGGTGATGATGACACGATGCATGACAAAGatgttaaaaaagaaaatatagagAATTTCGCTGAAGCCGATGACGCGGACggtgaaaataaacaaaatgatgaTTTTATGGACACAGGGGAAGATCAAGATATGaatcatgatgataatgacgatggtgatgatgacgaagatCTGCCTCCCATAGCGCCTGTAGTGGAAATAAATGAAGAAGTGATTAATTCCTTTAATAGTGAACCTAATGATGAAGACTATCTCGACGAGACAGTAGATCCTAATGAACCAATGGAAGGGGAAACTGATGAGAAAGTACTAGATCCTAATAAAATTTACGTAACTAAAGCTCAAAGGGATTTTATTCTCAAATACCGAGACGTAATTGAGCAAATAAACACAATGACATGTCTGTGTTGTAAAAGAGAACATCCAAGGAGGAAAGCCGTTATTCAGCATTTGCAAAAGAATGGACATAAGGTACCTAAGCATACATGTTACAATTGTGTTGTAACTTTTAGTCATATAGGTGCGTTACTTAGTCACATGCGCTCAAACTCGTGTACAGATTTGTGGAAAATTATCTATAATGAGAATGGCATCACCGATGACTTGGTGTTAGAGGATGAACCAAAAGATAACAAAGTCACATATAAGGATATATTTAATGCTAGATCGTATGCCTGTAAATTGTGCCCGGCAAAGTTCCAGTTGAaacaatttataatgaaacatgtGTTAGACGTTCACGAGGATGGCCAATCGAGAGTCCAGCTAGCTTGTGTACACTGCGGGTCTAGATTCAAAGACAAAGCTCTATGGAAGAAGCACATACGCAACGGAGAGTGTACTGTGTACATAGCATGTGATTTGTGTTCCGAAACTTTTATAACCATGCAAGAATTCAACGATCACGCATTAGCTATCCACGCGGGCAGCTTCGATCCggataatcaaaataaatgtgTCGACGGTCGACCCACAGATTGCCCCACTTGCGGAAAGAAGAATAGTACGTATCCAAACTTGGTAAAGCATTTAAAAATCATCCACAACGAAGACCGACCGCACTACTGCCAACATTGCGATGCCAAATTTAAGGAAGCGGCTGATCTCAACAAGCACATATACATGGAGCATTCTGACCGAACATTAGGAATGCAGAATGATCCCGATATGTCGCTAGTCAAAGAAGAGGCGGAAGAGTATCATTATTCCTGTACAGAATGTAACGCCATATTTGAAACGGTAGACGCGTGGACTGACCATCAAGTGGCTGAACACAATCAGATAGCACACCACTGTGATCAGTGCGAGAAGAAATTCCTGAGGCCGTCAGAACTGGCCGAACATAAAAACACACACTTGCGTGTTAAGTTCTATCCCTGTAGCGTGTGTGCTAATTCATATAGCACTGCTCTAAAATTGTCGGAACATGTGCAACAGGCCCATCCCGGTGCGAACACACTAATGTCAGGGGATAACGAATTCTTTTGTGATATCTGTGTCAGAGGCTTCAAAAGCCGGCAGGCTTATTCCAACCACATGCGTATACACGCGAGAGTACCCACAACTAACAGGAAACCCGTGGATCCAAAGAGCTTTGCACCACAAATTATCGGAAAGCCAATCCTACAATATCCAATGATACAGCAAGGTTTTGGCACGTTCAAGACCAATTGTAATGTCCCTAATGCACCTTACTCTTGTGATATTTGCGGCAAAGGTTTTATGCACAAGAAAAATATTTGGAAGCACAAAAAAGTTCTACATGCCGACATCGTTGACAGGAATGATAGTGAAGAGATATCGATGCACGCGTCGACTGAAGAGGACGAATATAATGTCGACGAAAACGGTGCTATGTTATCAACGCCACAGTTTGATAGCTTCAATTTTACAAGTTTACCCAACATAACCAATCACAATCAACATCAACCTCCTACTCACCATACACCACAAGAAATGCTCTTCTCATGTGATCTATGCTCCAAAAGGTTCCCCCTTAAAACTAGTTTATGGAAGCATAAACGCGCGAAACATGGAATTATCAATGCCAGTTCTATAGATACACCAGAAATTCTACAAGCCTCTGGAAGCGAAGGGGGCGGAGGTAGATCGAGTTGTACTATTTGCAAGATAACATTTGCAGATAAGAAATCCTACTATCGCCATAGAAAGAATGTGCATAAGTCAACAGTACAAATGTGTAAAATATGTGGCAAGCCTCTCAACTCGACACTGGAACTGTACGAGCACCTCAAAGCCGCTCATGCTAGGGAGCTCCTGGGTTACACCGCCAATCAGGGTTCCAGTAAAACGTCCAGACAGGAACAGGAATACGTGCAAGAAGATGCGGAGTACGACGGTGATCAGGAACCGGCCGACCCCAGCATCGAGTATCAGGCCCATTACCCTTGCAACACTTGCGGCAAACAGTTTATAGGACTACTCGCCTTACAGAACCACCAGTGCATCAATCAGCTCCAATCCCAACCGCAGACGTTCGACTGCGAAATATGTCACAAGAGTTACACGTCGATTGCTGCCCTCAAGAGCCATCGGGGATGGCATTTGAGATCTCCCGACGGTAAAGCGGCGGCGAATAACTCTGGACTGTGGATGCCCCACACGAAGGTGACCAATAAAGTGAGCAAATTCGAAGTATTCGATGCGTCCCAGCTTGCTAAAGTCTCACACTCTACTAATTTGTCACCGGCCGCCCTCGCAAAGCGGAGGCTACCTCCAGAGGTTGAGGTCACCGTTGTAAATCCAAACAAGAAGATGCGGTCGGATGACTCATTAGAATTAGACCAACAAAATAGTACGTCTGTCAGCGCGGACGACAGGTACTGCAATATTTGCGACAAAGAGTTCACGAAACGAGCGGCCTACCAGCGACATATGGATGAAGTGCATCAACCCAACTCCGTGTTCTGCCCGGTCTGTGACAAGAGTTTCACGAGGAAATCGACGCTGATAGTTCACATGAAGAAGCATTATGAGGGCGAGGAAGGCACATCTAGTGCTTCGATCCAAGACGACGGTGGTTTCGCTTGTGATATCTGTGGTATTCAGTTTGAGACTGACGCAGAAATGACGGCCCACCGAGACATGCATGGCGACGAATCCGCCGAATCTGATGACGGCGGCAGTGTGCCTATTCAACAACCCGGTGAGTTCACGTGTGCCCAGTGTGGGGACGGCGTGGCGACACCTCGTGACCTGATTGCCCACCGAGCCATGCACTCGACACCGACAAAGTTCTTCTGCAACATTTGCAAAGTATACTTTGCGAGAGCCATCGACTTGTCCACTCACACTCGAGCGAGGCATGCGGATAATGAAAAGCTGTTTTTCCCCTGTGCCATGTGCGACcggttttatatgaataaaaagaGTTTACAGAGGCACATTGAAATGTCACATTGA
- Protein Sequence
- MSVDYDRVCRLCLASECDLLPIFPTTSSDDSEPLVLASKIKDCVSVQIEENDNLPSNVCKKCNDNVNNWHIFKGVCERTQNKLLNLNNKDSNQLEELNVKSEPLLDEAYDDGVVIDGSYPDSENADSSSKLQPEGPPILTSLGLTPRSDKKYVDPRMDWQRVHTILDLVQDDEVIDSLQMREECDVVHLSEHDSDTDLELNEDVKQEYLDFKKGYVCRNKKKLLSKNPKLLSSHNIAKVKKVLNLRKKQSELPFKDYNLPKDAWQQFFTDDLLELIVSATNLKMESNSDKYTPTKIREIKTLIGILYYHGVMRSTHQKCSDLWSPEYGAPCVQLAMKYDRFKCLLQNLSFETNESNTIMELDTMKQIRQVFEIFALNCRTSFEVGHNVVIDEVILPVHGPCPFRYEIKRKQLNSGIKLVLVVDPNNFYISNLDVITDPFFGSDDIAMKLLQHLAGSYKTVIMDSWFTSTNLIYRLYGEYKLFTIAALNECNELLPPLFISQHRKDRNLLTGFLDEDVLLMSLIDSDLKTVNILTNEPTHYKKSNGMDSDKDENEADEPDEPDEPEEDDDEEEMSAHKGYGDIPNMPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELGAHNFDRYTNNVSAKKLNLQPKLRPNPFNPKARLMPNPISHKMQYMGKPLQPKIIPQKIIACPKPIPIKNAKPNHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIHNSGPESPETLISEPEIASFAVETILSEPDGFVHQPDDDDDCDEQNNRGHNYGTVDMESDNEIEIARQQQDENYQNDNDQNDDNIKDEYNENDKKGDDDTMHDKDVKKENIENFAEADDADGENKQNDDFMDTGEDQDMNHDDNDDGDDDEDLPPIAPVVEINEEVINSFNSEPNDEDYLDETVDPNEPMEGETDEKVLDPNKIYVTKAQRDFILKYRDVIEQINTMTCLCCKREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKIIYNENGITDDLVLEDEPKDNKVTYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLACVHCGSRFKDKALWKKHIRNGECTVYIACDLCSETFITMQEFNDHALAIHAGSFDPDNQNKCVDGRPTDCPTCGKKNSTYPNLVKHLKIIHNEDRPHYCQHCDAKFKEAADLNKHIYMEHSDRTLGMQNDPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCANSYSTALKLSEHVQQAHPGANTLMSGDNEFFCDICVRGFKSRQAYSNHMRIHARVPTTNRKPVDPKSFAPQIIGKPILQYPMIQQGFGTFKTNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIVDRNDSEEISMHASTEEDEYNVDENGAMLSTPQFDSFNFTSLPNITNHNQHQPPTHHTPQEMLFSCDLCSKRFPLKTSLWKHKRAKHGIINASSIDTPEILQASGSEGGGGRSSCTICKITFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYTANQGSSKTSRQEQEYVQEDAEYDGDQEPADPSIEYQAHYPCNTCGKQFIGLLALQNHQCINQLQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPHTKVTNKVSKFEVFDASQLAKVSHSTNLSPAALAKRRLPPEVEVTVVNPNKKMRSDDSLELDQQNSTSVSADDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGEEGTSSASIQDDGGFACDICGIQFETDAEMTAHRDMHGDESAESDDGGSVPIQQPGEFTCAQCGDGVATPRDLIAHRAMHSTPTKFFCNICKVYFARAIDLSTHTRARHADNEKLFFPCAMCDRFYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -