Hhel029032.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Helleia helle
Gene Symbol
-
Assembly
GCA_963853865.1
Location
OY971437.1:165535-177191[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.8e-06 0.00051 21.2 3.4 1 23 324 346 324 346 0.99
2 16 0.00017 0.018 16.3 2.9 3 23 354 374 352 374 0.98
3 16 0.00069 0.073 14.4 2.9 1 23 379 401 379 401 0.98
4 16 0.00095 0.1 14.0 1.1 1 23 407 429 407 429 0.97
5 16 0.011 1.1 10.7 7.3 2 23 435 456 434 456 0.97
6 16 0.0003 0.031 15.6 0.4 1 23 462 484 462 484 0.97
7 16 0.00012 0.013 16.8 3.4 2 23 490 511 489 511 0.97
8 16 0.006 0.63 11.5 0.4 1 23 517 539 517 539 0.96
9 16 0.0003 0.032 15.5 1.4 2 23 545 566 544 566 0.97
10 16 0.00013 0.014 16.7 2.3 1 23 572 594 572 594 0.97
11 16 9.3e-06 0.00098 20.3 4.1 1 23 615 637 615 637 0.99
12 16 1.3e-07 1.4e-05 26.2 3.0 1 23 641 663 641 663 0.98
13 16 1.4e-06 0.00015 22.8 2.8 1 23 669 691 669 691 0.99
14 16 2.5e-06 0.00027 22.1 5.5 1 23 697 719 697 719 0.97
15 16 0.00019 0.02 16.2 4.3 1 23 728 750 728 750 0.95
16 16 3e-05 0.0032 18.7 2.7 1 23 756 779 756 779 0.96

Sequence Information

Coding Sequence
ATGGCAACTAGTTCAATATTTCACAATGATGTGACAAGAAAGCAGGGACAGGGTCCTGATGACAGCTGGTTGAAGGATGACATCAGCCATCCAAAATATTTGAAGTATTTCATGGAAGATGAGCCTGCCAGTGACGCGCACGGCAATGAGTTGGTACAGGACAAGACGAACCTGGCAGGGTTCAACGGGGACATCGGAGATCCaagatacttaaaatattttatggctgACGATTCTGACACCAGCTCGTATGACAGCGAGCTGGAGCGAGACAGAAGGACCCTCACAGAAAACGTCACTCCCGAGAAAAAAGAAATTACAGAAAGCAAGACAAAGAGACAAGAAACAAAAGCTAAAGCAAAAGAAGTAAAACGCGCCGTGCTATTAGATAAAAAGGTGAAAAGAAATGccccaaagaaaaaaaagaagaatgacaCTGATGAGTCTACTTCTGAGGAAGAACTCGAAAACGTAATAGAAGTTAGTGAGACTGAAATAAGTGATATAGATGGATCTGAAGATGATGAAGAAATGTTGGTTGTGAGAGGAAATTTTGAGAAATTAACGCGTAAACCAGTTGAAGATGACTACGTTCTTGTAGTTTTTaacgcaaaaaatattaatgtttactATGTGGGCAAGATTATTGAAGTTGACACTTGCAACTATGGAGTTTCATTCATGCggcttattaataaacaaactaTGAAGTTCCGGATGCCATTGGAGCCTGATTTGGCTGATGTGAAATTAAAGGATATTAAAATGATTCTGCCACAGCCAAAAATTAATGGAACACAAAATCGGAACTCGACGTTCAACTTTCCAATACGTGTTGCTCCGACTATTAACTTACAATCCAAAGAAGACGACTTCGATCCGAGTTTAGGCGATGGATCGGGCGAATATCGGGCCAGAGTGTTAGAACATACAATGATCGAAAAAAGAACGCACGCGGGAGATAAAGAATATCGTTGTGAGATATGCGAGTTGAAATTCACATACAAAACTTATTTAAACAGACACAGAAGGACACACGCGGCCGACAAACCGTACGGCTGCAGCAAATGTAACAAAAAGTTCCCTTCTGAAGTTCATTTAAAGATACACAAAAAGACACACGCGAAAAAATCCTACAGTTGCAATGTTTGCTTTCAAAAATTCAAATCGTTAACTTATTTGAAAATACACAAGAAAATACATGACGGCGAAAAACCGTTCGCTTGTGATGTTTGCGAAAAGAAGTTCACgtcagatatttatttaaatatgcacAAAAAAAGACACAACCGCGAAACGACGACCTGCGATATTTGCAATCGGAATTTTTCATCGCACAGGTGTTTGAAACTGCATTTTAAAACTCACACAGGCGACAAACCGTTTCCTTGTGATGTCTGTAAGAAGAAATTCGCTTCTGATATTGATTTAAAAGTACATAGAAGCAGGCACTTCAACGAAACGACCACTTGCGAAATATGTGATTCGAAATTTCCAACGAATAAGTGTTTGAAGAAACACATGAAAATACACAAGGGGGAGAAACAGTACACGTGTGATGTTTGTAAAAAGAAGTACGCCTCCGATATTCTTTTGAGAATACACACGACGGAACACCTTAGCGATGAGATGACTTGCGATGTCTGTAATCGGGAGTTTTCATCCAtcagatctttaaaactacacaagaAAACCCACATCATTGAAAGGCCGTTCGATTGTGACGTTTGTGATCACCAGTTCGCATCGTACAGGCATTTGGAAATACACCAGAGAATACACAACAAAAAGATACAAATTAATAACGTGAAATTGGTGGACACATCTCCCAGTGAAAAGCCATACACGTGTGACGTTTGTAATCGTATCTTTTCTCAAAGCAGTTGTCTTAAATTACATAGAAAGACGCACGACGTTATCCACAGTTGTGACGTTTGCGGTAAGACATTCGCTCAGAACAGCAGCCTCACCAAACACAAGCGCACGCACACAGGAGAAAGGCCGTACGAGTGTAACATTTGCGACTTGAAGTTCTCCTACAAGAGTCATTTAGTAGTACACAAAAGGACGCACACGGGCGACAAACCGTTCTGTTGCAACATTTGTGATCGCAAATTCACCAACAACAGCAGTCTGAAGAGACATACGAGCACCCACGCGGGCGACGACACGAACAAGCCGTTCATCTGCGACGTGTGCCATCAAAACTTCCACCGCAAGAGCGATTTGAAACGCCACCTGACCGCGCACACGGGTGAGCGCCAATACGCGTGCGATGTGTGCAATCGGAAGTTCTCACAGAATTGTAATTTGAGTAGGCATAAAAAAATTGCTCATTAA
Protein Sequence
MATSSIFHNDVTRKQGQGPDDSWLKDDISHPKYLKYFMEDEPASDAHGNELVQDKTNLAGFNGDIGDPRYLKYFMADDSDTSSYDSELERDRRTLTENVTPEKKEITESKTKRQETKAKAKEVKRAVLLDKKVKRNAPKKKKKNDTDESTSEEELENVIEVSETEISDIDGSEDDEEMLVVRGNFEKLTRKPVEDDYVLVVFNAKNINVYYVGKIIEVDTCNYGVSFMRLINKQTMKFRMPLEPDLADVKLKDIKMILPQPKINGTQNRNSTFNFPIRVAPTINLQSKEDDFDPSLGDGSGEYRARVLEHTMIEKRTHAGDKEYRCEICELKFTYKTYLNRHRRTHAADKPYGCSKCNKKFPSEVHLKIHKKTHAKKSYSCNVCFQKFKSLTYLKIHKKIHDGEKPFACDVCEKKFTSDIYLNMHKKRHNRETTTCDICNRNFSSHRCLKLHFKTHTGDKPFPCDVCKKKFASDIDLKVHRSRHFNETTTCEICDSKFPTNKCLKKHMKIHKGEKQYTCDVCKKKYASDILLRIHTTEHLSDEMTCDVCNREFSSIRSLKLHKKTHIIERPFDCDVCDHQFASYRHLEIHQRIHNKKIQINNVKLVDTSPSEKPYTCDVCNRIFSQSSCLKLHRKTHDVIHSCDVCGKTFAQNSSLTKHKRTHTGERPYECNICDLKFSYKSHLVVHKRTHTGDKPFCCNICDRKFTNNSSLKRHTSTHAGDDTNKPFICDVCHQNFHRKSDLKRHLTAHTGERQYACDVCNRKFSQNCNLSRHKKIAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-