Hhel000357.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971414.1:3529448-3529924[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-09 4.2e-06 27.2 0.0 9 41 26 58 18 62 0.88
Sequence Information
- Coding Sequence
- ATGCCGCGACGAAATAGACCACCCTCAGTTCCCAGGAAAATAGGCAACCATACGGCGGAGGAGATCAAAACAGGGTTGAATTTGATACGAAGTGGTACATCCATTAAACAAGCTGCTAAAATTACTGGAATTCCATTTACAACATTAAAATCGTATCATAATAAGACTAAAACTTGCGAATCTCTAGAAAACCAAAGACTGGAACCAAATTATTCAGTCAATAGAATCTTCACACCTGAACAAGAGCAAACtcttaaagattattttaaccACTGCGCCCTCATGTTTTATGGTTTAACTAACAAAGAATGCCAAGAAATTGCGTTTCAATGTGCACAAATCAATAACTTGAAAATGCCGCAATCGTGGATTGAAAATCAAAGGGCCGGCAAATATTGGCTCATGGCATTCAGGAAGAGACATGACAACACTCAGAAAACCAGAACCATGCAGTCTTGCGAGTGCCACCGCATTTAA
- Protein Sequence
- MPRRNRPPSVPRKIGNHTAEEIKTGLNLIRSGTSIKQAAKITGIPFTTLKSYHNKTKTCESLENQRLEPNYSVNRIFTPEQEQTLKDYFNHCALMFYGLTNKECQEIAFQCAQINNLKMPQSWIENQRAGKYWLMAFRKRHDNTQKTRTMQSCECHRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -