Hhel028497.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- pol
- Assembly
- GCA_963853865.1
- Location
- OY971436.1:3640885-3652004[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.086 49 4.6 0.0 2 15 173 186 172 188 0.90 2 2 3.8e-08 2.1e-05 25.0 0.1 2 42 726 767 725 770 0.91
Sequence Information
- Coding Sequence
- atggCGCAATACGAATTAGATGCGATTTATAAGTCATTGAGGATGTTACCCGAATTTGATGGGAACCCTCACGTTTTGACTCgatttataaatctttgtgaTCAGATAGTTTTAACGCACATAGGTACTGATCCGGGACACCAATTAGGGAATTTAGCGTTAattaacggcattttgaataaaattacgggTCCCGCTGCTAGGTTAATAAATGCCAGTGGCATACCAGAAAATTGGCAGGGCATAAAAAATGCACTCATAAATAACTTCGCTGATCACCGGGATGAGACAGCACTTTATAGTGACCTTTCGATGCAGACCCAAGGTTCCAGCACaccacaagaattttatgagaGGTGTCAGAATCTTTTTAGCACGATTATGACATACATATCGTTACATGAAACTGTCCTTACAACTGTTATAGCTAAGCGAACGCTATATCAAAAGCTAACACTACAAGCTTATTTGCGAGGCCTAAAAGACCCCCGAGGTTATAGAATTAGATGCATGCGACCGGAGTCAATGGAAAAGGCTCTAGAGTATGTACAGGAGGagttaaatactttatacatgcaacaaagaaatgatagtggacatttaaAAAGACCCGAAATCACAAAAGCCAAGATAGAAGTCAACTTTCATATTCAAAGACAGTTAGGTTATATCCAAATATCCAATCCACCCCTTAAATTTCTGATAGATACGGGCGCTAATCAGTCTTTCATTAGCCCCGaggctgtacaaaaatattttagccataTGCCATTAAACTACGACCCTTTTGAGGTTACAAACGTACATGCTACTAGCAAAAACGACTACTCTATTACCTTACCCTGCTTTCCGGAATTATGTGAAAAAGtaattaataatcgtGGATGGGTCGAAATATCCAATCCCACGTGTAACGATATTATATTCTCCATGGATAGACCAGTACAAgcagaactatttaatattgaaagcgaccattttgaaaatttatctgAGCGCACGAAAGAAGTAATTTCTCGTTTAAGAACCCAGCATTTAAATCCGGAAGAACGtgctaacttaattaatttatgtgctaATTATGCCGACATATTCTACCTCGAAGGTGAACCATTAACATTCACCAAcaagataaaacacaaaattagaaCTACAGATGAAATTCCGGTACACACAAAAACTTATAGATATCCCTATGTCCATCGGCAAGAGGTAAGAGAACAAATTCAGAAAATGctcgaacaaaatataattaggccTTCTGATTCAGCTTGGAGCTCGCCAATCTGGGTAGTACCTAAGAAGGCGGATGCCTCAGGTAAAGTTAAGTGGCGTTTGGTCGTAGATTTCAGGAAAGTTAATGAGAAAACCATAGATGATAAATACCCCATACCAAATATAACTGACGTACTAGACAAACTTGGGAAATGTCAATACTTCACAACTCTCGATTTAGCTAGTGGCTTTTATCAAGTGGAAATGGACCCCCAGGATATTCATAAAACTGCTTTTAATGTAGAGAACGGGCATTACGAATTTTTGCGTATGCCTATGGGCTTAAAGAACTCACCTTCAACTTTTCAGCGTGTCATGGACAATGTTCTAAGAGACCTACAGAACCAAGTTTGCCTCGTATATTTGGATGACATTATAGTTTTTAGCACCTCCCTTCAGGAGCAtatagtaaatttagaaaaagttttcaaaaaattacgtgAATCGAATTTCAAAATCCAAATGGATAAATCAGAATTTCTAAAACTTGAAACCGAATTTTTAGGTCATGTAATAAGTAACGAGGGTGTTAAACCTAACCCTAATAAAATTCACGCTATTCAAAATTACCCGTTGCCAAAAACTACAACTCAAATTAAGCGATTCCTTGGATTACTCGGGTATTACAGAAAATTCATCCCCGATTTTGCACGTATTACAAAACCGCTAACTCAATGTCTGAAAAAaggttcaaaaattaatttagataaaaaatatacggattGCTTTGAACATTGTAAAACTCTTTTGACGAACGATCCGATTTTGCAGTATCCAGATTTTTCGAAAGAATTTATACTCACAACAGACGCGTCCAATGTTGCCATAGGCGCAATTTTGTCTCAAGGAACAATAGGTTCCGATAAACCAATAGCCTATGCCTCAAGAACCCTTAATTCAAaagaaaatcttcaaaaagctCTTGAAGCGGTAAGAAAGAAACAAATTAATAGTTATGTAGCATCCGAAAAATATGGCGTACCTAGGTCTACTATCATTCACCGTTTGTATGAAACCCGAGGAGCTAAGCAGTCAAAACCGGGAAAACCAACAGCTTTTTCGAAAGATGAAGAGACCAAGATAGCTTCGGGTATTCATGTAATGGAGAAATGTGGCTTTCCATTGACCAAAAAAGATGTTATCGCTATGATATCTACATACATACGTAGAAATGGTATTAAAACACCATTTAAAGATAGCATACCTGGAGATGATTGGTTTCGTAGTTTTCGTAAGCGGAATAACCTGTCTATTAAGACACCGCAATCGGTAGAGGTAGCGAGAAGAAAGGCTTGCAACCCATTTATTGTGTACGAATATTTTGGGCTActagaaaaaataacaaaagaattGGGGCTAACTGAAAAACCCGGACAAATATACAACATGGATGAAACTAGTTTTTCTAGTGATCCCTCAAAATCTAAAGTCGTGGGGAAAATAGGGTTCCGATCAACAAGAACGACAAGTTCACCTGGTAAAGAAAATACTACTGTGCTTTTGGCCGCCAATGCACTTGGTGAGAAAATACCACCCTTAATTGTATTTCAGGGCAAACATTTGTGGTCTGAATGGTTTTTTAAGAATGAGATGGTAAACACAGCATATGCTGTAAGTAAAAAGGGGTGGATGGAGACCACCATTTTCGAAAAGTACATAAAAGATGTTTTTATACCTGCTATCGGTCCTGAACGGCCGGTGCTGGTGATTTTCGACGGGCATTCAACTCATGTTGACCTTAGCGTTATAGAATTAGCTCAAGCTAATGATATCACGGTCTTAAAACAGCCAGCTCATTCATCTGACGTTCTGCAACCGTTAGATTGCAGTGTAATGAAACCGATGAAAGATCGATGGGATAGTGAGTTGGTCCAATGGCAGCGATTGCATGTAGGAGCCAAGTTGCCTAAGCAAGAACTGGCCAGATTAATCACTAAAATATGGGATGAATTGTATccggcaataataacaaatggCTTCAGAAAAACTGGAATTTTTCCAGTTGACAGGAATGCAATTTCAAAAGACAAATTTGATGCGCTTTCATGGTCGAGATGGGAAACACATATTGAACAAGAGCGGAACCAGCCTACTAATAGAGTTGGTAGTCCCCTCGTCCAATCACCTGAAAAGAATGCGACAAAAAATAAAGTTCCCACGCTTTCTGACTTGATAGTTAAAAAGTTTAATCTTCAATTCAAATCTATTGATTCAAGGAAATCAAATTCAGCCGATGGTGATTGTTTGCTGCAATATGACGAGTACGAAAGGGGAAAAGCATGTTCGGAAGTAGTAAAAGACCCAAAAACATACGTACTGCCGCCtgtaaaacgtaaaaattgtaacattcAGTCGAATAGTTTAAAAATACTGAATGTTGAAATACTTAATTCTGGCAAAAACAAAGAGAACATTGATCCATTATCATTTGAACAGATACTGTTGGAATCTATTGCTCGAAAAGACCTTCCAAAAGTTCCCAAAAAACGAATAAACTCTGGTGCTGAAATACTTACTTATAAGAGTGCAATAGAATGCATGAAAAAGGAAAAAGAAGAAAGAGAACAGAAAAAACTAAGAAATTGA
- Protein Sequence
- MAQYELDAIYKSLRMLPEFDGNPHVLTRFINLCDQIVLTHIGTDPGHQLGNLALINGILNKITGPAARLINASGIPENWQGIKNALINNFADHRDETALYSDLSMQTQGSSTPQEFYERCQNLFSTIMTYISLHETVLTTVIAKRTLYQKLTLQAYLRGLKDPRGYRIRCMRPESMEKALEYVQEELNTLYMQQRNDSGHLKRPEITKAKIEVNFHIQRQLGYIQISNPPLKFLIDTGANQSFISPEAVQKYFSHMPLNYDPFEVTNVHATSKNDYSITLPCFPELCEKVINNRGWVEISNPTCNDIIFSMDRPVQAELFNIESDHFENLSERTKEVISRLRTQHLNPEERANLINLCANYADIFYLEGEPLTFTNKIKHKIRTTDEIPVHTKTYRYPYVHRQEVREQIQKMLEQNIIRPSDSAWSSPIWVVPKKADASGKVKWRLVVDFRKVNEKTIDDKYPIPNITDVLDKLGKCQYFTTLDLASGFYQVEMDPQDIHKTAFNVENGHYEFLRMPMGLKNSPSTFQRVMDNVLRDLQNQVCLVYLDDIIVFSTSLQEHIVNLEKVFKKLRESNFKIQMDKSEFLKLETEFLGHVISNEGVKPNPNKIHAIQNYPLPKTTTQIKRFLGLLGYYRKFIPDFARITKPLTQCLKKGSKINLDKKYTDCFEHCKTLLTNDPILQYPDFSKEFILTTDASNVAIGAILSQGTIGSDKPIAYASRTLNSKENLQKALEAVRKKQINSYVASEKYGVPRSTIIHRLYETRGAKQSKPGKPTAFSKDEETKIASGIHVMEKCGFPLTKKDVIAMISTYIRRNGIKTPFKDSIPGDDWFRSFRKRNNLSIKTPQSVEVARRKACNPFIVYEYFGLLEKITKELGLTEKPGQIYNMDETSFSSDPSKSKVVGKIGFRSTRTTSSPGKENTTVLLAANALGEKIPPLIVFQGKHLWSEWFFKNEMVNTAYAVSKKGWMETTIFEKYIKDVFIPAIGPERPVLVIFDGHSTHVDLSVIELAQANDITVLKQPAHSSDVLQPLDCSVMKPMKDRWDSELVQWQRLHVGAKLPKQELARLITKIWDELYPAIITNGFRKTGIFPVDRNAISKDKFDALSWSRWETHIEQERNQPTNRVGSPLVQSPEKNATKNKVPTLSDLIVKKFNLQFKSIDSRKSNSADGDCLLQYDEYERGKACSEVVKDPKTYVLPPVKRKNCNIQSNSLKILNVEILNSGKNKENIDPLSFEQILLESIARKDLPKVPKKRINSGAEILTYKSAIECMKKEKEEREQKKLRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -