Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.6e-12 2e-09 37.8 0.1 1 39 16 55 16 59 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.6e-12	2e-09	37.8	0.1	1	39	16	55	16	59	0.93

Coding Sequence: ATGCCTCGATCATACAACCGAAAATCTTCGCGGGCAACTGCTTATACTCAAGAAGCTCTACAATCTGCTATACACAGGATCAACAATAAGGAACTCTCCTACAATGCTGCTTCACGTATATATGGAATACCAAAAAGCACTCTTAGTGATAGAGTTTTTAAAAAAACAGCATTAGTAAGTGCCACCCTCGGCAGATCAACAGCTATTCcaaaaaatagaatagaaaaaatagaATCTCAACTGGCAAACGGCCTTCGAGTTATGGAAAACTGGGGCTGGGGACTATCAAGGGAAGAGgGGAAAGGAATAGGAAAGAAATCGTGGCCTGGTAAAGAAAACATAGCTTCTAATAAAAGTAATTCCAGTGATTTATATAAAAGCATGACATATCCAAAACCAAATACAAAAGATCCTGAAGCAAAAAACAATAATCCAGAAGCAATCATTTTAGCAGATAatactttaaaacaaaatatagagAAAAAGCAATCTGCACAAAATTCAGTCACTACGAAATCTGTTAAAAAACGGAAGAGATCATTTAGTAGTGCTACGACTGACGAAAGCATTGAAATGAGTGCCCATAGCGATTCCGATTTACTAGATTCGTTTAGTGATATATTATCTGACTGTGATCTATGGAACAAGACTGATTCTGTAAAATATGAGGGAAACAAGACTGAAgaagaaatattattaactaaagAACAGGAAATAGAAGAAATAGTTAAACAAATACACGAGACGGAAAATCAAACTCACCCTCACGGAGATACCTACGAAGAAAATTGTCAAGACAGAAATAAAGAAGGGATTAATGTCCAGAACTGCGTTAAAAAACGCAAAGATCATGATACTGTACCTCACGTTAATATCGTTAAAGAAATAGAATTACTACAAATAAAGGAATTAATACTCGCCTAA
Protein Sequence: MPRSYNRKSSRATAYTQEALQSAIHRINNKELSYNAASRIYGIPKSTLSDRVFKKTALVSATLGRSTAIPKNRIEKIESQLANGLRVMENWGWGLSREEGKGIGKKSWPGKENIASNKSNSSDLYKSMTYPKPNTKDPEAKNNNPEAIILADNTLKQNIEKKQSAQNSVTTKSVKKRKRSFSSATTDESIEMSAHSDSDLLDSFSDILSDCDLWNKTDSVKYEGNKTEEEILLTKEQEIEEIVKQIHETENQTHPHGDTYEENCQDRNKEGINVQNCVKKRKDHDTVPHVNIVKEIELLQIKELILA

Sequence clustering based on sequence similarity using MMseqs2