Hhel021782.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- -
- Assembly
- GCA_963853865.1
- Location
- OY971430.1:995455-1003989[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-10 3e-07 30.9 0.0 4 39 175 211 174 215 0.90 2 4 1.7e-11 9.7e-09 35.7 0.2 2 39 227 264 226 267 0.92 3 4 2.3e-12 1.3e-09 38.5 0.5 2 45 282 325 281 325 0.96 4 4 4.4e-17 2.5e-14 53.6 0.0 2 42 333 374 332 375 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGTCACGATCTAGGTTTGGTGAAATGCGAGCCGACTTCGGACGAAGATGACAGCAACCAGCCATGTGCATCAGAACAGCTGTGGTACCAAGCCGAGCCGAGGCCTCAGGGAGACGACAACACCCCACACCTGCTTCATTTTCAGAAAACCAGAATAAGAACTTCACATTTACTTGTTGGGCGTCAGGGATCTCTGGAAGAGCTGGTGCCAGCGCTGGCAGGGCCCGCGGCGACGCCAGTACGAGAGCACCTGCCCTCGCCGAGGGAGGTCTCGTTAGCGACCCTGCAGCCGGCCGCACTGGGGAATGCAATGGGTGCCTCAATCATTGACATGCACGTGAAGATGATGAATGTGAAGGAAGTAGCAGACTCAGCGGAGTTTGTGCCGCTCATGGGTGTCAAAGAGGAACCGACGTCTGAAGGAGagCAACACGTACTGAGCGGTGACGATACGAGCGACTCGAGCGGCGCGCCCGAGCCGGTGGGGCGCGGCAGCCCCAAATCATGGTCGGCGCGGGACATGGATAACGCTCTCGAGGCACTGCGGACACACCACATGAGCCTCACAAAGGCGTCAGCCACATTTGGCATTCCGTCCACTACACTCTGGCAGCGCGCGCACCGCCTGGGCATCGACACACCAAAGAAGGACGGCGCCTCCAAGTCCTGGAGCGAGAAGGACCTTAAGGCAGCCCTGCACGCGCTGCGGGCCGGGACCATCTCCGCCAATAAGGCGAGCAAGGCGTACGGCATCCCCAGCAGTACCCTGTACAAGATAGCGCGGCGCGAGGGTATCCGCCTGGCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCGGACCTGACGCGCGCGCTCGCCGCAGTGCGCGCGGGGGCTGCCGTGCAGAGGGCCGCCGCGCACTACGGCATCGCCACCGGAACGTTATACGGGAGGTGCAAGCGAGAGGGCATAGAGTTGTCCCGCTCCAACCCGACTCCGTGGTCGGAGGGTGCTATGGGGGAGGCGCTGGAAGCCGTGAGGGTCGGTCAGATGTCCATAAACCAGGCGGCGATCCACTATAATCTGCCCTACTCGTCGCTGTACGGCCGATTCAAGAGGTGCAAGTACCAGCCGCCGCAGAGAATGCAGCCACCTCAGCTGGACTCGTCATGCGTGGACTCAACCCAGGATATTTTCCATCAACCCCCCTCCAGGTCCCTCGAGGAGAGTCCATCCGACGTCCACTCATTAAGCGACTCACTCTCGTCTCCGTTCACCGACGTTCACCACGCGCTGTACGCGCTGGAGCCCTACGGAATGGCCTATTGCGACGTTACCAGCTGA
- Protein Sequence
- MPGHDLGLVKCEPTSDEDDSNQPCASEQLWYQAEPRPQGDDNTPHLLHFQKTRIRTSHLLVGRQGSLEELVPALAGPAATPVREHLPSPREVSLATLQPAALGNAMGASIIDMHVKMMNVKEVADSAEFVPLMGVKEEPTSEGEQHVLSGDDTSDSSGAPEPVGRGSPKSWSARDMDNALEALRTHHMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGASKSWSEKDLKAALHALRAGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLTRALAAVRAGAAVQRAAAHYGIATGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPPQRMQPPQLDSSCVDSTQDIFHQPPSRSLEESPSDVHSLSDSLSSPFTDVHHALYALEPYGMAYCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -