Hvir012036.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_002382865.1
- Location
- NWSH01000027.1:92800-111015[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.056 3.3 8.1 4.3 1 23 510 532 510 532 0.98 2 11 2.2 1.3e+02 3.0 3.2 1 23 539 562 539 562 0.92 3 11 0.17 10 6.5 2.6 1 23 566 588 566 588 0.97 4 11 0.00041 0.024 14.8 3.4 1 23 593 616 593 616 0.97 5 11 1.3 78 3.8 3.6 1 23 620 643 620 643 0.90 6 11 0.65 39 4.7 1.1 3 21 656 674 655 679 0.89 7 11 6.8 4.1e+02 1.5 0.9 3 16 711 723 710 731 0.67 8 11 0.012 0.71 10.2 0.2 3 20 756 773 755 776 0.93 9 11 0.00031 0.019 15.2 1.4 1 23 782 805 782 805 0.93 10 11 6.1e-05 0.0037 17.4 1.6 2 23 813 834 813 834 0.96 11 11 0.0022 0.13 12.5 1.4 1 23 840 863 840 863 0.93
Sequence Information
- Coding Sequence
- atggtGAAAACTTGCTGCGTTGCGTTTTGTAGACAAGAATCTTATCGTGGTTGTGGACTTTCATTTCACTCGTTCCCAACAGACCCCATCCTGAAACAAGCGTGGTTAGATGCTATTAAGCGTGACAAAGTAGCCAAGCGAGCCGTAGTTTGCAGCCGGCACTTCAAAGTAGAAGACTACGTGACACCCTCTTCAAATAAATTGAGGCCTTCGGTAGTGCCTTATGTGGCACCGCATGAAGATCAGGATGTTACCGTGACAAAGATCTGTCGTGTTTGCCTGGCGTTGGACGTGAAAATGTATGCAATAAACGAGTTAGAATTAAACGAAATGTTTGAAAGTGTTACAGCTATTGTTGATGACGAACTAAAACATCAGGTATATGAACATCTGTGCTGGGAATGTGTGGCTAGACTGTCGTCAGCCTCTGCCTTCAAAGACAAGGCCTTGCTGGCTGATTCCTTACTCCAAGGATTGTTGGAGACGGGAGACGAAattaaaacaaaacacataaaagctataaaagaaaattacagcATTCTCAATCCAACTTTAACTATTAACAGAGTTTTTCACTCCATAGAGAATTATAGAGAGGAcacgagtaaaaaaaatattaaaattgagtaCATAAATCATGAAAAACTGCACCCtattgaagaagaaaatataccCAAACCTGCTAAAATTACTACAAATACGAGATTAAATGTGAAAAGTAGAATTTTGAACTCAAAAGTAGACGTTATGCCAAAAATCTTAGACAACGAAACTGATTACGAATACGAATTTTTAGAAGAAGCGTTAGATACTAATGAGAATCGTGTCAAAAATGAAATCAAAGAAGAAACTTTTAGTATCGAtactaatattagtattgaagatattaaaagtgaaataaatatatcgGATGTCGacgaaaatttatttaatgataacTTAAATGATTCTGACATGTTTGAAGATGAAGATGATAATGAAAGCAGGACTTATTTAACTTTCGATAATGACAGTTTGACAGATGATGAAAATTTGACGGGTGATGAAAATTTGACGGGTGATGAAAATTTGACAGGCGATACGTTTTTTGATGATAATAATGAGAATGAAGTTAAAGTTGGAAGTGTTGAGATGCTTGAAGATTTGGACTCTTTACATGAAGAAAAttctttatataataataacggAAGTATAATAGATCATGATTATATACCACAATCGAaagaaactataataatagaaaaagaGAATGCAAAAAAACATTTAGTTACAAAAACCAAGAAGGttttgaatagaaaaaaaatacaaagtaaaatttTTGGTTTAGATGATAATGTGACAGATGAGTATAGACAATCTGTTAAAAGGCAAATTGCTATTTTGAAAAGATTAGAAAATTCTCAATACGTAAGAAGAAAACCGCAAGAAATAGATTTATCATTCTTCACTGTAACAAAAAGAACATACCAGGAACAAATTAATGATATAGAGAATAGGAAGGAAACTACCAAATACAAGGAAGCCCCATATAAATGTGATATATGTCATATGCACTATTATAAACTAAGAGCTTTACTCGTTCATAAAGAGAAACATACTGACgCATGGGGTAAATTCGAATGCTTCATATGTAGAATGAGACACAGGAACAAGAGAGGTCTAAGACAACACCTTACAGACAGACACGTACATTTCTACAAATGTAATAAATGTTCTTTTGGCACTATGACCAGATTTACAGTTCGTCGTCACATAGATTACCATAAGGGTAAAAAGTTTCAGTGTCCACATTGTAATATGGTGTTTACcaaATCAACGACATATTTCGGCCATCTAAGACTGAAGCATCTATGTGACTTTGTATGTGAACTCTGTGGCTATATGTTTCTAAGCAAACATGGCGTTGCTACACACAAGTGTTATAAACATGCTAACGAACTTGAtAAGGAACTGGAAGGTCCACATTGTGAAGTGTGTGATGTAACATTTGCGTCGCAGGAGGCACACGACCGACATCTAAGGCTGTCTAGAAAACATACTTATGAATCTGATCCCAATCGTCTTCGTAATGAACATGTAAGCAAACGCTCAGTTGTTGAGAAACCCCCTGAAAATGAGACTCCGAGGATATGTGAGCACTGCAACATGCCGTATCCAAACCGGCGGTACGGTCAGCATCTCAGGCGGTTCCACCCGGATATACACCGCGCCAAAATGTTGGAGAGCAGGTCGAGATGGAAACGGAAGTACTCATCAGATAATATGTGTGAACACTGTGGGAAATTGTATCCGTCCAAAGCAGTCCTCCGCGACCACATGTGGGTGCACACGGGTGAGAAGTACTACAAATGTGACAAGTGTCCCAAGTCCTTCTCCACCCGGCAGGGGCAGAGGATACACGAGCAGTATCTACACCAGGGCAAGAAGGGCAACGCTGTGTGTCCGATATGTGGGAAGACTTTACTGCATAACAGTAATCTGAAGAAGCATATGTTTagtCACACCGGTTTAAAACCTCACACTTGTTCGATATGCGGCAAAACTTTCGCGTGGGTTTATGAGCTACGGAGTCACGTGAACCACGTACATTTGAACCAGCCGTGGCCCAAACGCGTGCGACACCGCCAGAGACGCGCCACCACACACCACACCACTGAAGAGtga
- Protein Sequence
- MVKTCCVAFCRQESYRGCGLSFHSFPTDPILKQAWLDAIKRDKVAKRAVVCSRHFKVEDYVTPSSNKLRPSVVPYVAPHEDQDVTVTKICRVCLALDVKMYAINELELNEMFESVTAIVDDELKHQVYEHLCWECVARLSSASAFKDKALLADSLLQGLLETGDEIKTKHIKAIKENYSILNPTLTINRVFHSIENYREDTSKKNIKIEYINHEKLHPIEEENIPKPAKITTNTRLNVKSRILNSKVDVMPKILDNETDYEYEFLEEALDTNENRVKNEIKEETFSIDTNISIEDIKSEINISDVDENLFNDNLNDSDMFEDEDDNESRTYLTFDNDSLTDDENLTGDENLTGDENLTGDTFFDDNNENEVKVGSVEMLEDLDSLHEENSLYNNNGSIIDHDYIPQSKETIIIEKENAKKHLVTKTKKVLNRKKIQSKIFGLDDNVTDEYRQSVKRQIAILKRLENSQYVRRKPQEIDLSFFTVTKRTYQEQINDIENRKETTKYKEAPYKCDICHMHYYKLRALLVHKEKHTDAWGKFECFICRMRHRNKRGLRQHLTDRHVHFYKCNKCSFGTMTRFTVRRHIDYHKGKKFQCPHCNMVFTKSTTYFGHLRLKHLCDFVCELCGYMFLSKHGVATHKCYKHANELDKELEGPHCEVCDVTFASQEAHDRHLRLSRKHTYESDPNRLRNEHVSKRSVVEKPPENETPRICEHCNMPYPNRRYGQHLRRFHPDIHRAKMLESRSRWKRKYSSDNMCEHCGKLYPSKAVLRDHMWVHTGEKYYKCDKCPKSFSTRQGQRIHEQYLHQGKKGNAVCPICGKTLLHNSNLKKHMFSHTGLKPHTCSICGKTFAWVYELRSHVNHVHLNQPWPKRVRHRQRRATTHHTTEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786077;
- 90% Identity
- iTF_00786077;
- 80% Identity
- iTF_00786077;