Hvir014094.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- topi
- Assembly
- GCA_002382865.1
- Location
- NWSH01000707.1:13843-30005[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.016 0.98 9.8 2.9 1 23 1312 1334 1312 1334 0.98 2 10 0.0018 0.11 12.8 1.3 1 23 1395 1417 1395 1418 0.95 3 10 0.12 7.2 7.0 1.0 1 23 1422 1445 1422 1445 0.94 4 10 0.83 50 4.4 0.2 1 20 1457 1476 1457 1478 0.92 5 10 0.003 0.18 12.1 0.2 3 23 1491 1511 1490 1511 0.97 6 10 0.0011 0.067 13.4 1.2 2 23 1516 1538 1515 1538 0.96 7 10 0.027 1.6 9.1 4.5 2 23 1559 1580 1558 1580 0.96 8 10 0.0073 0.44 10.9 0.8 1 23 1586 1608 1586 1608 0.97 9 10 0.00048 0.029 14.6 0.8 1 23 1614 1636 1614 1636 0.94 10 10 6.8e-06 0.00041 20.4 3.7 1 23 1642 1665 1642 1665 0.98
Sequence Information
- Coding Sequence
- ATGGAGGACTTACTAGCGTGTCGTGTTTGTCTCACTACGAGCGCAAATCTCTATGATATGTACAAATATAGgcttaaaaatctatttgaattATTTAGCGGAATTACAGTATCACCCGCAGATAACTATCCTCAATATCTATGCAGTTACTGCGGGTCTCAACTGCTAAAATGTGCAGCGTTCAGAGACAGATGCAAACTTGCAAACGATCTTATGAAGCAAGCGGAAAAGCAGTGCGAATTGCTAACAACAGACCAAATACATACAATAGCTGTGCTAAACAATACGGAATTACCGCTCACAATCACCCCCCCGGAATTGACACAAACTGAAGCAATAGAGGTCAAAATTGAACATCtaactgaaaataatttcaatgatGAAGAATTCGATGCAGGAGAACTCAATGTAGAAGGACTGAATCCAGAAGAACTTAATGCAGAAGAACTCCATGCAGACGAACTCCATGCAGAAGAACTCAATGCAGAAGAACTTAATTCAGAAGATCTTAACGAAGCAGAACTCCTTGCAGAAGAACTTCATGCAGAAGAACTCAATGCTGAAGAACTCCTCAATGAAGAAGACCTAGAATTCAGCGATGAAGAACCTTTAGCTAATAAAGTCAGAAAAAATAGGGATTTAGACATCGAGATTCAATCCGTTGACacgaattttagtatttttgatgAAATCTCTGAATTGGGCTGCAGAACTATAGATGATTGCAGTCAAACTGAGATTGATGAGGCCAGCAGAATTGACATTGATGAGGGCAACGGAATTGAGACTGATGAGAGCAACAGAATAGAGACTGATGGGAGCAACAGAAGGAGTGATGATAGCAACGGAATTGAGATTGATGGGAGCAACAGAACGGAGATTGATAACAACAATATAATAGAGATTGATGAGAGCATCAGAACGGCGATTGATCTGAGCAACAGAAGAAAGATTGATAATAACAACAGAATAGATATTGATGAGAGCAACACAAAGATTGGTGAGAGCAACAGAACGGTAATTGAAGCGAGCTATAGAACTGTGATTGATAACAGCAACAGAACAGAGATTGATAACAACAATTTAATGGAGATTGATGGGAGCAACAGAACGGTGATTGATCTGAGCAACAGAATGGTGGTTGACGAGAGCTATAGAACCGTGATTGATGGGAGCAACAGAACGGAGATTGATAACAACAATATAATAGAGATTGATGGGAGCAACAGAACGGTGATTGATCTGAGTAACAGAATGGCGGTTGACGAGAGCTATAGAAGTGTGATTAATAACAACAATGTAATGGAGATTGATGGGAGCAACAGAACGGTGATTGCTGTGAGCAACAGACCGGTGATTGATCTGAGCAACGGAACATTGATTGGTGAGAAAAACATAATGATGATTGAAAACAGCAATAGAACGGCGATTGATGAGAGCAACAGAACGGCGATTGATAACATCATAATAGAGATTGGTAACAACAACATGGAGATTGATGGGCGCAACAGAACGGTGATTACTGAGAGCAACAGACCGGTGATTGATCTGAGCAACAGAATGGTGGTTGACGAAAGCTATAGAACGGTGATTGATAACAACATAATAGAGATTGATGGGAGCAACAGAACGGTGATTGCTGAGAGCAACAGACCGGTGATTGATCTGAGCAACAGAACATTGATTGGTGAGAAAAACATAATGATGATTGATAACAGTAATAGAACGGCGATTGATGAGAGCAACAGAACGGCGATTGATAACATGATCATACTAGAGATTGATAACAACAACATAGAGATTGATGGGCGCAACAGAACGGTGATTGCTGAGAGCAACAGTCCGGTAATTGACCTGAGCAACAGAACATTGATTGGTGGGAACAAAACAACATTGATTGCTGAGAGCTACAGAACGGTGGTTGACGAGAGCTATAGAACGGTGATTGATAACAACAACAGAATAGAGATTGATGGGAGCAACAGAACGGTGATTGCTGAGAGCAACAGACCGGTGATTGATCTGAGCAACAGAACATTGATTGGTGAGAAAAACATAATGATGATTGATAACAGTAATAGAACGGCGATTGATGAGAGCAACAGAACGGCGATTGATAACATGATCATACTAGAGATTGATAACAACAACATAGAGATTGATGGGCGCAACAGAACGGTGATTGCTGAGAGCAACAGTCCGGTAATTGACCTGAGCAACAGAACATTGATTGGTGGGAACAAAACAACATTGATTGCTGAGAGCTACAGAACGGTGGTTGACGAGAGCTATAGAACGGTGATTGATAACAACAACAGAATAGAGATTGATGGGAGCAACAGAACGGTGATTGCTGAGAGCAACAGACCGGTGATTGATCTGAGCAACAGAACATTGATTGGTGAGAAAAACATAATGATGATTGATAACAGTAATAGAACGGCGATTGATGAGAGCAACAGAACGGCGATTGATAACATGATCATACTAGAGATTGATAACAACAACATAGAGATTGATGGGCGCAACAGAACGGTGATTGCTGAGAGCAACAGTCCGGTAATTGACCTGAGCAACAGAACATTGATTGGTGGGAACAAAACAACATTGATTGCTGAGAGCTACAGAACGGTGGTTGACGAGAGCTATAGAACGGTGATTGATAACAACAACAGAATAGAGATTGATGGGAGCAACAGAACGGTGATTGCTGAGAGCAACAGACCGGTGATTGATCTGAGCAACAGAACATTGATTGGTGAGAAAAACATAATGATGATTGATAACAGCAATAGAACGGCGATTGATGAGAGCGACAGAACGGCGATTGATAACATGATCATACTAGAGATTGATAACAACAACATAGAGATTGATGGGAGCAACAGAACGGTGATTGCTGAGAGCAACAGACCGGTGATTGATCTGAGCAACAGGACATTGATTGGTGAGAAAAACATAATGATGATTGATAACAGCAATAGAACGGCGATTGATGAGAGCTACAGAACGGTGATTGATAACAGCAACAGAATAGAGATTGAAGGTAGCAACAGAAAGAATGATGAGAGCAACAAAACGGCGATCGATTATAATAACGGAATTGACATTTATGACAATAACAGAATTGGGATTGATGAGAGCAACAAAACGGTAATTGATGAGAGCCACGGAATTGAGATTGACGAGAGCAACAGAACATTGATTAGTGAGGACAACGGAACGGTGATTGATAGCAACAACTTAATAGACATTGATGAGACCATAACAAAATTGATTAGTGAGAGCAACGAAGAAACGTTAAGAAGAACGGTTATTAATGAGAACTATAGAACTGTGTTTGATGACGGCAAAAGGATGGAGATTGATAACAACAATATAATAGAGACTGATAACAGCAACAGAAATATTTATGAGAGCTACAGACTTGCGATtgataataacaacaaaatagaTATTGACGAGAGCAACAAAACGGTGATTCATTACAGCAACAAAACGGTGATTgataacaataattatgttaCTGAGAGAGGTGAGAGCAACAGAAATATTTATGAGAGCAACACAATATTAATTGGTGCGAGCAACAGAGCGCTGATTGGTGACAGCAATAGAAAAAATTATGAGAGCAACAGAACGGTGATTGCTGACAGCAACGAAATAGTGATTAATGATGATATTGATGATAACAGCATAATAGACCTTGACGAACAAAGTAATGATGTCCAGAGTATGGAGTTGTCTGACATTGATGATGCGTCAGACCTTGATGAGAAGTCTGACAATGATCAGACCGAGTTTGATAATGGGAATAGCAATAACCCTGACGAATGTTCTTGTGGTGACATTGAGGTAATATACCTAACGAAAGAGGAACAAATCAAAGATGTTCAGGACAGAAAGAATTCTGTCAATTATATCAATTCTTTCTTTAAATGTGAGCATTGCTACAAGGGGTTTCTACAGGATTCAGCTTACAATAACCATATGTTACGACATAACCGATCTTACGGTCCCGAACACTGCGAGATCTGCGACACCTGGTGGCCAACTTTACGCAATTTGAAATCCCATCTCACCATAGCTCACGAACGGAAATTCCTATGCAAGATTTGTAACCACATATCAAAAAGCAGCCACAGAGCTAAAGAGCATTTTAAGTGGCATAAGGGCcataaatttgtttgtaatatctGCGGTGCGAAGTTCGCGAAGTCTACGAGTCAGCTGACTCACCTTCGGCTGCACCATCCCTCGAAGCACTGTTGTGAGGTGTGCGGCGAGAGTTTCCTGGGAGAAGTCGGGTTGAATATGCATATTAAGAAGTCGCATAGAGGCTGCGAGAATGCGAATCCAGAAACGGAGTTTAAATGCGACAAAtgcttaatttatttcaaaagtatGGAAGCTCTGGATATACATAAAAATGGTTATAAAAATGGCGTTTGTGATGGCAGTCAGAAttCGTGTTTCCAATGCGGTGAGAATGTACCGACGCAGGACGCTCTGAAAGAACATTTGAAGTCGCATGAAGCCGGCGTCAAGTGCGAAGAGTGCGACAGAATGTTCGCGCACGAGCGCTCGTTCTCGGTGCACTACCAGCGCGTGCACCTCGGCATCAAGCTGAAGCAGTTCACGCGGCCTAAGGACAGGAGAAACCACACCGCCTGTGTGTGTGAGCTCTGCGGGAAGAAATGTGTTTCGAACGCGGCCCTAATATGTCACCAGCGCACCCACACGGGCGAGAAACCCTTCCAGTGTATAGAGTGCCCTAAGAAGTTCAGCATATTTCAACGATTACAGATCCACATTCGTACCCACACGGGTGAGAGGCCGTTCAAATGTATGGTGTGTCCGAAGGCCTTCATGCACAAAGCGGCGCTCAACAGGCACGACCGGGTACATTCAGGCGAGAAACCATATAAATGCAGTCATTGTGACAAGTCGTTCTCCCAGTCCAACTCAATGAAGCTGCACGTGAAGACGGTGCACCTGAAGCAGCCGGCGCCTTACAGGCCGCGCCGCGACACCACTATACAATGCTTCTTGCAGAACTACGTCGCATCCGCGGgggtttaa
- Protein Sequence
- MEDLLACRVCLTTSANLYDMYKYRLKNLFELFSGITVSPADNYPQYLCSYCGSQLLKCAAFRDRCKLANDLMKQAEKQCELLTTDQIHTIAVLNNTELPLTITPPELTQTEAIEVKIEHLTENNFNDEEFDAGELNVEGLNPEELNAEELHADELHAEELNAEELNSEDLNEAELLAEELHAEELNAEELLNEEDLEFSDEEPLANKVRKNRDLDIEIQSVDTNFSIFDEISELGCRTIDDCSQTEIDEASRIDIDEGNGIETDESNRIETDGSNRRSDDSNGIEIDGSNRTEIDNNNIIEIDESIRTAIDLSNRRKIDNNNRIDIDESNTKIGESNRTVIEASYRTVIDNSNRTEIDNNNLMEIDGSNRTVIDLSNRMVVDESYRTVIDGSNRTEIDNNNIIEIDGSNRTVIDLSNRMAVDESYRSVINNNNVMEIDGSNRTVIAVSNRPVIDLSNGTLIGEKNIMMIENSNRTAIDESNRTAIDNIIIEIGNNNMEIDGRNRTVITESNRPVIDLSNRMVVDESYRTVIDNNIIEIDGSNRTVIAESNRPVIDLSNRTLIGEKNIMMIDNSNRTAIDESNRTAIDNMIILEIDNNNIEIDGRNRTVIAESNSPVIDLSNRTLIGGNKTTLIAESYRTVVDESYRTVIDNNNRIEIDGSNRTVIAESNRPVIDLSNRTLIGEKNIMMIDNSNRTAIDESNRTAIDNMIILEIDNNNIEIDGRNRTVIAESNSPVIDLSNRTLIGGNKTTLIAESYRTVVDESYRTVIDNNNRIEIDGSNRTVIAESNRPVIDLSNRTLIGEKNIMMIDNSNRTAIDESNRTAIDNMIILEIDNNNIEIDGRNRTVIAESNSPVIDLSNRTLIGGNKTTLIAESYRTVVDESYRTVIDNNNRIEIDGSNRTVIAESNRPVIDLSNRTLIGEKNIMMIDNSNRTAIDESDRTAIDNMIILEIDNNNIEIDGSNRTVIAESNRPVIDLSNRTLIGEKNIMMIDNSNRTAIDESYRTVIDNSNRIEIEGSNRKNDESNKTAIDYNNGIDIYDNNRIGIDESNKTVIDESHGIEIDESNRTLISEDNGTVIDSNNLIDIDETITKLISESNEETLRRTVINENYRTVFDDGKRMEIDNNNIIETDNSNRNIYESYRLAIDNNNKIDIDESNKTVIHYSNKTVIDNNNYVTERGESNRNIYESNTILIGASNRALIGDSNRKNYESNRTVIADSNEIVINDDIDDNSIIDLDEQSNDVQSMELSDIDDASDLDEKSDNDQTEFDNGNSNNPDECSCGDIEVIYLTKEEQIKDVQDRKNSVNYINSFFKCEHCYKGFLQDSAYNNHMLRHNRSYGPEHCEICDTWWPTLRNLKSHLTIAHERKFLCKICNHISKSSHRAKEHFKWHKGHKFVCNICGAKFAKSTSQLTHLRLHHPSKHCCEVCGESFLGEVGLNMHIKKSHRGCENANPETEFKCDKCLIYFKSMEALDIHKNGYKNGVCDGSQNSCFQCGENVPTQDALKEHLKSHEAGVKCEECDRMFAHERSFSVHYQRVHLGIKLKQFTRPKDRRNHTACVCELCGKKCVSNAALICHQRTHTGEKPFQCIECPKKFSIFQRLQIHIRTHTGERPFKCMVCPKAFMHKAALNRHDRVHSGEKPYKCSHCDKSFSQSNSMKLHVKTVHLKQPAPYRPRRDTTIQCFLQNYVASAGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -