Hvir014558.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Heliothis virescens
Gene Symbol
SFXN1
Assembly
GCA_002382865.1
Location
NWSH01002958.1:27012-42311[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00026 0.015 15.4 1.5 1 23 535 557 535 557 0.98
2 10 0.064 3.8 7.9 5.1 1 23 565 588 565 588 0.94
3 10 6.2 3.7e+02 1.7 0.2 1 23 592 615 592 615 0.87
4 10 0.0048 0.29 11.4 2.7 1 23 690 712 690 712 0.99
5 10 4.7e-05 0.0028 17.8 1.3 2 23 721 743 720 743 0.96
6 10 4.9 2.9e+02 2.0 6.8 1 23 747 769 747 769 0.98
7 10 0.017 1 9.7 2.0 1 23 774 797 774 797 0.97
8 10 1.2 70 3.9 3.9 3 23 803 824 801 824 0.86
9 10 0.0016 0.099 12.9 1.0 3 23 830 850 829 850 0.97
10 10 4.3e-06 0.00026 21.0 2.6 1 23 856 879 856 879 0.98

Sequence Information

Coding Sequence
ATGCCGATAGACTTGGATAAGCCGCGATGGGATCAGAGCACGTATTGGGGTCGCGCGAGGCACTTCATACTGCTCACCAACCCATTGAACGCTTTCGCTACTGATAAACAGCTCAATGAGGCCGCGAGAGTGGTCAAAGAGTACAGAAAAACTAAAACGATGCCCCCTGGTTACGATGAAGATAAGCTATGGGCGACCAAGTATTTGTACGACAGCGCGTTCCACCCGGACACTGGAGAGAAGATGATGAGGATCGGACGCATGTCTGCGCAGGCGCCTATGAACACGCTCATTGGTGGatGCATGATATCGTTTTATAGAAAGAAATCAGCAGTACTTTTCTGGCAATGGATGAATCAGTCGTTTAACGCTGTAGTTAATTTCACGAACCGTTCTGGTGACGCACCAATAACTACTAAACAATTAATCGCGTCTTACTTCGCGGCCTGCGGGGGTGCCATGGGCATTGCCTTTTACCTCAACAGCAAAGttaaggGCATGAACCCATTGTATGCGCGGTTGGTACCCTTCGCGGCTGTCTGCGGCGCTAACTTCATCAATATCCCCATGATGAGGAGCAATGAAATCCTGAACGGCACGCCGGTGTTCACGGCGGAGGGGCAGCGCGTGGGCAACTCCAAGATCGCGGCCTGCACCGGCATCCTGCTCGTCTGCATCTCACGAATCGGGATGGCGGTGCCTGGCATGACGATTGTGCCCATCATAACGAACATAGCAGTTCAAAGAGGCTTGTTCAAAGCCAACTCGCTGGTAGTGTTGCCATTTCAAATGTCCCTGGTGTGGCTCACCGTGACATTCGCCACGCCAATGTGCTGTGCCATCTTCGATCAAAAAGCCGCCATCAGCATTAATTTCATCGAGAGCCACTTGAAGATACGGCAAGAAGATGGAATGCCGGATTACCTATGTTTTCAGTGTACAGCGATTGTGAGAAGCTTCAAAAGATTTCGTGATAGATGCCACCGATCTCATTATGCTTTGAAAGAAATTTTAAGTAGAAACAACGAGATAAATgtaagaaatttgaaagatctGGACCGCGATCTCCTTGGTATAATGCCGCAACTATCGTACGTGAATTTAGACAAAACACACTACGAGGAAGTAAAGTTCCAATGGAAGAAACATAACCGCATAGACTGGTGTAACTCCTCCAAACACAATATACCAGTTGTTCACTGCAGTACGTTGACCGCCGACAACACTTTCAATGAAACAACCACTACTGAAGAGTTggaatttacaaaacaaaatattaaaacggATGTTGATGCAATGGATCACTACGAAATACCTATAGAGAAGGACTTGACCAAAGATGAGCCACGGTACTGCGATACAACAAACGATACTGAAATACCGGTGTCTTTTATGGATGATAATGACATGTACGACAGTGGAAATGATCAGGACCCTTATCAGGATGCAGACACACTTCCAAACTTAGCACTGAAGGTTGAGAGCACCGAGGGGGAAGTAGATGGAGCTGAAATGGATGAGGAGTATGCTTCATTGGTACCAATATCGGTAAAAGAGGCTAAGGCAGCGGTGGAAGTGTACAAAATGTTTACTCAGGGTAAATACCACTGTGAGATATGCAATAAAGCTTATAATAATGAAGAACGGATGAAAGTGCATTTGCGGATGCATGATAAGCATATAAGTGGCAAGTTCCACTGTAAACTGTGTCAATACTATTACAAAACGGAGTTCTTGCTGAAGACTCATATGACTGAAAAACATATGTTTAAGTATTTGTGTAGGAAATGTCCTGAAGTCAGTTTTGACAGaatATCAGCAAAACAACACTACATCTGGGTACACTTACAAAAGGGCAACAAAAAGAACTCAAACTGGTACGAATCTAGGCCCAAATGGTTGAACCCTAGAGGAGGCAAAAGGGTCAAGGGTGTTGTTACTTTGAAACCTATTAAAAAGAACACCAAGTTGCCTGAAGACTTCCTAGTGTACTCCCCAATAGGGCACGAAGAGCAGTATAAATTGATACAAGATAGGCAGAACTCTAGAAATTATCAAGAAGCTAATTATCAGTGTAAATTGTGCTACAGAGGATTCCGGGTTATGTTGACGTATGAGAAGCATATGAAAAAACATGATCCTgaaTACTCAGGCCCCTTACAATGTGATATTTGCAAGATTTTCTTCAAAGACCAGCGGAAACtgtacaaacatatgaatatcACGCATCTGTACAAATACTCCTGCCAGCTTTGTAGTTTTGTGTGCTGTAATAGaggACAAGCCCACATGCATTACAGATGGCATAAGAACGTGACGTACGAGTGTCCGCACTGCAAGAGGGAATTCTTgaAAGCATCAACGCGACTCACTCACATAAGAATAAAGCACCCGTCCATGTGTTTGTGCACGATATGCGGACACAGCTTCGTCAGTGACTCGGGGTTGTACTGCCACAAGCAAATTGCACACACTGAAGCGCTTCTGTGTCCGCACTGCGACCGCCGGTTCAACATGCCCAGCAACCGGGACAGGCATCTCGTGGTGCACACAGGCGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAAACTGTGCATCTCAAGATACCGTACGCGCCTTGGAACAAGAAGAATCGGAAGCGGCGCAAGGAGTTAGAAACCGCGGGCATGTCGACCCCGCTGCCTCTCGCGCCGGCGCCACACAAGCTGGCGGCGTTCGACGCTCCTGCCGACTATCTCAACGCGTACATCACTTATAACGACGACTAG
Protein Sequence
MPIDLDKPRWDQSTYWGRARHFILLTNPLNAFATDKQLNEAARVVKEYRKTKTMPPGYDEDKLWATKYLYDSAFHPDTGEKMMRIGRMSAQAPMNTLIGGCMISFYRKKSAVLFWQWMNQSFNAVVNFTNRSGDAPITTKQLIASYFAACGGAMGIAFYLNSKVKGMNPLYARLVPFAAVCGANFINIPMMRSNEILNGTPVFTAEGQRVGNSKIAACTGILLVCISRIGMAVPGMTIVPIITNIAVQRGLFKANSLVVLPFQMSLVWLTVTFATPMCCAIFDQKAAISINFIESHLKIRQEDGMPDYLCFQCTAIVRSFKRFRDRCHRSHYALKEILSRNNEINVRNLKDLDRDLLGIMPQLSYVNLDKTHYEEVKFQWKKHNRIDWCNSSKHNIPVVHCSTLTADNTFNETTTTEELEFTKQNIKTDVDAMDHYEIPIEKDLTKDEPRYCDTTNDTEIPVSFMDDNDMYDSGNDQDPYQDADTLPNLALKVESTEGEVDGAEMDEEYASLVPISVKEAKAAVEVYKMFTQGKYHCEICNKAYNNEERMKVHLRMHDKHISGKFHCKLCQYYYKTEFLLKTHMTEKHMFKYLCRKCPEVSFDRISAKQHYIWVHLQKGNKKNSNWYESRPKWLNPRGGKRVKGVVTLKPIKKNTKLPEDFLVYSPIGHEEQYKLIQDRQNSRNYQEANYQCKLCYRGFRVMLTYEKHMKKHDPEYSGPLQCDICKIFFKDQRKLYKHMNITHLYKYSCQLCSFVCCNRGQAHMHYRWHKNVTYECPHCKREFLKASTRLTHIRIKHPSMCLCTICGHSFVSDSGLYCHKQIAHTEALLCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELETAGMSTPLPLAPAPHKLAAFDAPADYLNAYITYNDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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