Hvir000402.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- zfy1
- Assembly
- GCA_002382865.1
- Location
- NWSH01000010.1:28990-34657[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.11 6.7 7.1 3.0 1 23 262 284 262 285 0.95 2 10 0.77 46 4.5 0.5 2 23 320 341 319 341 0.91 3 10 0.0025 0.15 12.3 2.6 1 23 345 368 345 368 0.98 4 10 1.9e-05 0.0011 19.0 4.5 2 23 372 394 372 394 0.96 5 10 0.0083 0.49 10.7 4.6 1 23 397 420 397 420 0.95 6 10 0.049 3 8.3 0.1 3 21 439 457 438 458 0.93 7 10 0.0002 0.012 15.8 0.2 2 23 471 493 470 493 0.94 8 10 0.00021 0.013 15.7 2.6 1 23 499 522 499 522 0.94 9 10 0.0076 0.45 10.8 0.2 3 23 533 553 532 553 0.97 10 10 5.5e-06 0.00033 20.7 0.9 1 23 559 582 559 582 0.98
Sequence Information
- Coding Sequence
- atggATCTTAAAGTAAAATGTGAACGTGTGTTATGGCTATGCCATGGCTGTTTGAGCACTGATAGAAAGCTAGCATGCGTTACTGGTCACaacaaaacattgtttattGAATTGAGACAAGATGTAAAGCATAATCAAACGAAAAACTTACTGCTGTGCTGGGAATGCGTGGCGTTTCTAAACAAACTGGAACTGTTTCGAACTCGCATTAAGACCGCTCAATACAGGCTCTTACAGTTTGTAAAAACATATGagAATGACCTCCCAACCACCTTGTCAGGTATAGAAATCACAAGCAAACATCAATATGACTATGAGTACAAATATATTGACACAGAACAAGAGGCAAGGGAAAGAAACGGAGaggaaaaacataaatattttgtatcagACCAAAAAGATGTACTACCCGAACAAAACGAAATTATTTTAGACTATAAGGACGTAAACATCACTGAAATAGAAccagaaattaaaatagaatataatgaAGACATTAAAGAAGAATTTGACAACATTTCTTATAGTTGCAATAACGATACAGATTATGAAGATTTAAAACTGGAACCTGACATGAATGAGACAATACCAaaacagaaaactaaaaaaaaaagtaaactatCTCAAAGTTTAAAAAAGTTGTATGAGAAACATGCTACAATCGCTAAAACAGATATTTTGTTCAATCGTAAAGAGCATTCCGAGGAGGTCTGTCTAAAAGAGGAGGCAATAGAGCAATTTCTGGACAAAGACAGAGGACATCAGAGTTTAGAAGCATGTCCTTATAAATGTACAACATGTAGAGTTGGATATATAAGAGAAATGGACTACTTGAGACACCAAACTTTTCATCATTTGACGATACAATTTCCAACAAGTTGCATAGCTtgcaaaaaaaagaatattaattcGCAGTCCAAACTTGAAGAACATTGGATAGAGCACACACGTATGTCACGATGCAAACTTTGTGGAGAAATAACTAGATTAAGAGGAATGAAGAAACATTTTAATGTAGCCCACTCCAAGGTTTTTACTTGTAAAGAGTGCTCACTGGAATTTGGGACTCTCCGGACATTTAGCAAGCACTACAAAACAATGCATAAGATGGCCGTGTGTGATTACTGCAAAAAAAAGTTTACGAGCAAACATAAACTGGAAAGACATATCTCTAAGAACCACCAACCTCACTCATGCACTATATGCAACAAGCACTATCGTTCGTACCGCTTCTACGAGGTCCACTTAAGGGCTGAACACCCGGAACTCCTGTCGTGTCTAAGAGGTCTCGACTCTAACAAAGAAATGCGTTACTGTGTAGAGTGTGACATACAGTTTCCCAGCATTTATAAGTACCAGAGACATTTGCAAGAATCTGTTAAGCATAGGCCTAGGAAGAAAGAACGaaTACCGTGTCCGGACTGTGGCAAAATATTCAGCCGTATGGTATACAAGAACAATCATTACAGATTCGCTCATATGAAAGTGACTAAGCATCATTGCGATATCTGTAATAAgTATTTTACAAACGGTTACGGCCTGCGGAAACACATTCAGGGTGTACACGAAAAGATACCGttgcctaaaaataaaatctgcgATCTATGTGGCAGAGGGTTCAGTGCCAACAGAATATTGGTGAACCACCGTCGTACCCACACTGGTGAGAGACCGTTCAAGTGCGAGTTCTGTCCTGCCACTTTCGCTCAGCAAACGGCCTTGAAGTCACATCAGAaaacacaacacaaaaataatattttattagccaGTTAA
- Protein Sequence
- MDLKVKCERVLWLCHGCLSTDRKLACVTGHNKTLFIELRQDVKHNQTKNLLLCWECVAFLNKLELFRTRIKTAQYRLLQFVKTYENDLPTTLSGIEITSKHQYDYEYKYIDTEQEARERNGEEKHKYFVSDQKDVLPEQNEIILDYKDVNITEIEPEIKIEYNEDIKEEFDNISYSCNNDTDYEDLKLEPDMNETIPKQKTKKKSKLSQSLKKLYEKHATIAKTDILFNRKEHSEEVCLKEEAIEQFLDKDRGHQSLEACPYKCTTCRVGYIREMDYLRHQTFHHLTIQFPTSCIACKKKNINSQSKLEEHWIEHTRMSRCKLCGEITRLRGMKKHFNVAHSKVFTCKECSLEFGTLRTFSKHYKTMHKMAVCDYCKKKFTSKHKLERHISKNHQPHSCTICNKHYRSYRFYEVHLRAEHPELLSCLRGLDSNKEMRYCVECDIQFPSIYKYQRHLQESVKHRPRKKERIPCPDCGKIFSRMVYKNNHYRFAHMKVTKHHCDICNKYFTNGYGLRKHIQGVHEKIPLPKNKICDLCGRGFSANRILVNHRRTHTGERPFKCEFCPATFAQQTALKSHQKTQHKNNILLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -