Hvir012824.1
Basic Information
- Insect
- Heliothis virescens
- Gene Symbol
- -
- Assembly
- GCA_002382865.1
- Location
- NWSH01000080.1:72317-96067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00074 0.044 14.0 1.3 1 23 274 297 274 297 0.96 2 11 0.1 6 7.3 2.1 1 23 305 327 305 327 0.97 3 11 0.00075 0.045 14.0 0.7 1 20 359 378 359 380 0.93 4 11 0.0051 0.31 11.4 1.4 2 21 387 406 387 407 0.91 5 11 8.5e-05 0.0051 17.0 0.7 2 23 423 444 422 444 0.94 6 11 9.8e-05 0.0059 16.8 0.3 1 23 449 471 449 471 0.98 7 11 0.012 0.73 10.2 4.5 1 21 480 500 480 505 0.91 8 11 7.3e-05 0.0044 17.2 2.4 1 23 517 540 517 540 0.91 9 11 0.0026 0.16 12.3 0.2 1 23 546 569 546 569 0.94 10 11 0.013 0.75 10.1 0.6 3 19 582 598 580 603 0.89 11 11 0.19 11 6.4 1.1 1 23 612 635 612 635 0.93
Sequence Information
- Coding Sequence
- ATGAAGGAAatcaacataaatattgaaGGATATAATGTCAACGGGATATGCGTTGGCTGTTTGAGCTATAATCGCCGTATGTTCTATCATAGGGATATAAAAGAGTGTTTTCGTTTGCTCGGAAATATTGATGTGCCTGATGGTTTAGAAATACAAGTATGCTGGGAATGTCTAGCCTACATCAGATCTGCTCTCAAATTCAAGGAACAAATGCTGCAGTCATTTGATTTCCTCATAAACTACTCTCAAGAGcACACCTTCTTAGACTCGCCAAATGACTTCATACCTCATTCGAACAGTCGGGTAAATAACTTCATAAAATCAGAGATCGATAGTTGTGACTTACTCGTCACTGAAGTGTTAGCCAACGATGACAAGAGTGATGACATCAAAATTGAAGAAAATGAGATCAAGTATGATTTTGATACGTTAGTAGTAAAAGAGGAGAGTTCAAACCATAGTTACACGGAGGTATTCCAAGAGGTACCCGTGGAAAATGACGTCACTTCCGATGAGGACGTGCAGCTGTCCAAAATTAAGGAGAAGGAGGATAGAGGGAGGAAGAAGATTAGAGAGGATAGGAAACGGGATAGGGTGACATCCCCGAAAAACAGCaaagagaaaaaacaaaagtCATCCGACAATAATGAGCAAACTGAGCAAAACGAGCAAATCGAGGAAAACGAGCAAAAAGAGAAAAAGggtagaaaattattaaatctaCCAGAAGAGATGGTAGAATTGTATACAATGAGGGAGGATGAAATGTGGACTGTTCGGATTGAAGACCTTATTAGTAAAGACTTTCAGAAACTTAAATATAGATGTGATAATTGTATAAAATCTTTCAACACACAGAAGTTGATGCAGGATCATATGAATGGCAAACATCAACCGAAAAGTATAGACTGCCACCAATGCAACATATGTAAAGCCTATTTCCTAACCAAGGACAATGTGTCGGCGCACAAGAAGCTGCACCTGCAGAGCTACCGGTGCATAGAGTGCGGGTTCGTTACGACGGTCAAGCGCATAATGTCTCGGCACGTGGCGAACCACAAGCACGTGTACTCTCATATCTGTTATACTTGCGGGACTAGTTTTAATACAAAATCGAAGCTGGCGTACCACCGCGGCGTGTGCAGCCAGGAGAAGCCGCAGTGTGACTGCTGTGGAAAGGTATTCGCTAACAAGATGACCCTCAAGTACCATCTCAAccGCATGCAGCCACAGAAGGACTCTAAACCGAAGCAGAAACTCTTCATACCATGCAAGGGCTGTGATAAGGTGTTCCATACTAAGAAGAGCTATAGAGCGCATGTTGTAATCCACGACGGCGTATCATACCCGTGTCCCATCTGCGGCAAGTTGTTCCAGTGGAAGCGCAACCTCGCGCGGCACACGCGCAACCACCGCGAGCGCGACGCCGGCAACACCCACGCGTGTCGCGCCTGCAACAAGACATTCGCCAGCCGCGACTGTTACAACAATCATATGCGGCTCAGCAAGAAACATGTGGGCGCTGACACCTTCCAACGGAATTTCAGACATGAATGCACGTATTGCGGCAAAAAGTTTGCCACGAAGTGGTGTCTCACCGACCACGTCGACTGGGACCACTTGAAGATCATTAAGTACCAGTGCAGCGTATGTTTCAAGGCGTTCAAAACAGCTAAAATATTAGTCGTTCACGTGAATAATATACACGAAGGCAAGAAAAAAGAGATTGAGGGCGAACATTTGTGTGAAATATGCGGGAAATCTTACAAGaCGGTAAAACGCCTGAAAGGCCACGTGTGGTCGATGCACACAAACCGGCCGAACAGTAAAATGTACAAGTGCAAGCTCTGTCCGGCTACCTTCATGTGGCAGACCAGCATATACAAGCATACCAAGATGATGCACGACAATAAGAAGAACAAGCCGCCGCGACCTCCCCCAGTGAAGAAAGAAGAGCCttatccgggaatcgaactggCGAACCGCATgcaatattttcaacaaaatatcgGCGGCAACCTTAATCTAGTACAAATACAACCAGGAGGAATCAGTCAAAATATTGTgtga
- Protein Sequence
- MKEININIEGYNVNGICVGCLSYNRRMFYHRDIKECFRLLGNIDVPDGLEIQVCWECLAYIRSALKFKEQMLQSFDFLINYSQEHTFLDSPNDFIPHSNSRVNNFIKSEIDSCDLLVTEVLANDDKSDDIKIEENEIKYDFDTLVVKEESSNHSYTEVFQEVPVENDVTSDEDVQLSKIKEKEDRGRKKIREDRKRDRVTSPKNSKEKKQKSSDNNEQTEQNEQIEENEQKEKKGRKLLNLPEEMVELYTMREDEMWTVRIEDLISKDFQKLKYRCDNCIKSFNTQKLMQDHMNGKHQPKSIDCHQCNICKAYFLTKDNVSAHKKLHLQSYRCIECGFVTTVKRIMSRHVANHKHVYSHICYTCGTSFNTKSKLAYHRGVCSQEKPQCDCCGKVFANKMTLKYHLNRMQPQKDSKPKQKLFIPCKGCDKVFHTKKSYRAHVVIHDGVSYPCPICGKLFQWKRNLARHTRNHRERDAGNTHACRACNKTFASRDCYNNHMRLSKKHVGADTFQRNFRHECTYCGKKFATKWCLTDHVDWDHLKIIKYQCSVCFKAFKTAKILVVHVNNIHEGKKKEIEGEHLCEICGKSYKTVKRLKGHVWSMHTNRPNSKMYKCKLCPATFMWQTSIYKHTKMMHDNKKNKPPRPPPVKKEEPYPGIELANRMQYFQQNIGGNLNLVQIQPGGISQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784677;
- 90% Identity
- -
- 80% Identity
- -